Publications

2017

Zhao L., Cheng D., Huang X., Chen M., Dall'Osto L., Xing J., Gao L., Li L., Wang Y., Bassi R., Peng L., Wang Y., Rochaix J.D. & Huang F.: A Light Harvesting Complex-Like Protein in Maintenance of Photosynthetic Components in Chlamydomonas.
Plant Physiol 2017, 174(4):2419-2433. PMID: 28637830.

Hazak O., Brandt B., Cattaneo P., Santiago J., Rodriguez-Villalon A., Hothorn M. & Hardtke C.S.: Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature.
EMBO Rep 2017, 18(8):1367-1381. PMID: 28607033.

Dell'Aglio E., Boycheva S. & Fitzpatrick T.B.: The Pseudoenzyme PDX1.2 Sustains Vitamin B6 Biosynthesis as a Function of Heat Stress.
Plant Physiol 2017, 174(4):2098-2112. PMID: 28550206.

Kerruth S., Langner P., Raffelberg S., Gärtner W. & Heberle J.: Characterization of the Blue-Light-Activated Adenylyl Cyclase mPAC by Flash Photolysis and FTIR Spectroscopy.
Photochem Photobiol 2017, 93(3):857-864. PMID: 28500710.

Zufferey M., Montandon C., Douet V., Demarsy E., Agne B., Baginsky S. & Kessler F.: The novel chloroplast outer membrane kinase KOC1 is a required component of the plastid protein import machinery.
J Biol Chem 2017, 292(17):6952-6964. PMID: 28283569.

Yin R.: Cooling Down Thermomorphogenesis by UV-B Signaling.
Trends Plant Sci 2017, 22(6):447-449. PMID: 28438558.

Yin R. & Ulm R.: How plants cope with UV-B: from perception to response.
Curr Opin Plant Biol 2017, 37:42-48. PMID: 28411583.

Van Der Straeten D., Fitzpatrick T.B. & De Steur H.: Editorial overview: Biofortification of crops: achievements, future challenges, socio-economic, health and ethical aspects.
Curr Opin Biotechnol 2017, 44:vii-x. PMID: 28342725.

Faè M., Accossato S., Cella R., Fontana F., Goldschmidt-Clermont M., Leelavathi S., Reddy V.S. & Longoni P.: Comparison of transplastomic Chlamydomonas reinhardtii and Nicotiana tabacum expression system for the production of a bacterial endoglucanase.
Appl Microbiol Biotechnol 2017, 101(10):4085-4092. PMID: 28190097.

Hohmann U., Lau K. & Hothorn M.: The Structural Basis of Ligand Perception and Signal Activation by Receptor Kinases.
Annu Rev Plant Biol 2017, 68:109-137. PMID: 28125280.

Fudge J., Mangel N., Gruissem W., Vanderschuren H. & Fitzpatrick T.B.: Rationalising vitamin B6 biofortification in crop plants.
Curr Opin Biotechnol 2017, 44:130-137. PMID: 28086191.

Catoni M., Griffiths J., Becker C., Zabet N.R., Bayon C., Dapp M., Lieberman-Lazarovich M., Weigel D. & Paszkowski J.: DNA sequence properties that predict susceptibility to epiallelic switching.
EMBO J 2017, 36(5):617-628. PMID: 28069706.

Bernula P., Crocco C.D., Arongaus A.B., Ulm R., Nagy F. & Viczián A.: Expression of the UVR8 photoreceptor in different tissues reveals tissue-autonomous features of UV-B signalling.
Plant Cell Environ 2017. PMID: 28058744.

Hayes S., Sharma A., Fraser D.P., Trevisan M., Cragg-Barber C.K., Tavridou E., Fankhauser C., Jenkins G.I. & Franklin K.A.: UV-B Perceived by the UVR8 Photoreceptor Inhibits Plant Thermomorphogenesis.
Curr Biol 2017, 27(1):120-127. PMID: 27989670.

2016

Piskurewicz U., Iwasaki M., Susaki D., Megies C., Kinoshita T. & Lopez-Molina L.: Dormancy-specific imprinting underlies maternal inheritance of seed dormancy in Arabidopsis thaliana.
Elife 2016, 5. PMID: 28005006.

Allorent G., Lefebvre-Legendre L., Chappuis R., Kuntz M., Truong T.B., Niyogi K.K., Ulm R. & Goldschmidt-Clermont M.: UV-B photoreceptor-mediated protection of the photosynthetic machinery in Chlamydomonas reinhardtii.
Proc Natl Acad Sci U S A 2016, 113(51):14864-14869. PMID: 27930292.

Fossou R.K., Ziegler D., Zézé A., Barja F. & Perret X.: Two Major Clades of Bradyrhizobia Dominate Symbiotic Interactions with Pigeonpea in Fields of Côte d'Ivoire.
Front Microbiol 2016, 7:1793. PMID: 27891120.

Wassem R., Marin A.M., Daddaoua A., Monteiro R.A., Chubatsu L.S., Ramos J.L., Deakin W.J., Broughton W.J., Pedrosa F.O. & Souza E.M.: A NodD-like protein activates transcription of genes involved with naringenin degradation in a flavonoid-dependent manner in Herbaspirillum seropedicae.
Environ Microbiol 2016. PMID: 27878922.

Fankhauser C. & Ulm R.: A photoreceptor's on-off switch.
Science 2016, 354(6310):282-283. PMID: 27846514.

Wild R. & Hothorn M.: The macro domain as fusion tag for carrier-driven crystallization.
Protein Sci 2017, 26(2):365-374. PMID: 27774698.

Chen M., Zhang J., Zhao L., Xing J., Peng L., Kuang T., Rochaix J.D. & Huang F.: Loss of algal Proton Gradient Regulation 5 increases reactive oxygen species scavenging and H2 evolution.
J Integr Plant Biol 2016, 58(12):943-946. PMID: 27762070.

Chahtane H., Kim W. & Lopez-Molina L.: Primary seed dormancy: a temporally multilayered riddle waiting to be unlocked.
J Exp Bot 2016. PMID: 27729475.

Pietzenuk B., Markus C., Gaubert H., Bagwan N., Merotto A., Bucher E. & Pecinka A.: Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements.
Genome Biol 2016, 17(1):209. PMID: 27729060.

Denay G., Chahtane H., Tichtinsky G. & Parcy F.: A flower is born: an update on Arabidopsis floral meristem formation.
Curr Opin Plant Biol 2016, 35:15-22. PMID: 27721031.

Ducret V., Gonzalez M.R., Scrignari T. & Perron K.: OprD Repression upon Metal Treatment Requires the RNA Chaperone Hfq in Pseudomonas aeruginosa.
Genes 2016, 7(10). PMID: 27706108.

Robinson G.C., Kaufmann M., Roux C. & Fitzpatrick T.B.: Structural definition of the lysine swing in Arabidopsis thaliana PDX1: Intermediate channeling facilitating vitamin B6 biosynthesis.
Proc Natl Acad Sci U S A 2016, 113(40):E5821-E5829. PMID: 27647886.

Feng P., Guo H., Chi W., Chai X., Sun X., Xu X., Ma J., Rochaix J.D., Leister D., Wang H., Lu C. & Zhang L.: Chloroplast retrograde signal regulates flowering.
Proc Natl Acad Sci U S A 2016. PMID: 27601637.

Guo H., Feng P., Chi W., Sun X., Xu X., Li Y., Ren D., Lu C., Rochaix J.D., Leister D. & Zhang L.: Plastid-nucleus communication involves calcium-modulated MAPK signalling.
Nat Commun 2016, 7:12173. PMID: 27399341.

Yin R., Skvortsova M.Y., Loubéry S. & Ulm R.: COP1 is required for UV-B-induced nuclear accumulation of the UVR8 photoreceptor.
Proc Natl Acad Sci U S A 2016, 113(30):E4415-22. PMID: 27407149.

Hofer A., Marques E., Kieliger N., Gatter S.K., Jordi S., Ferrari E., Hofmann M., Fitzpatrick T.B., Hottiger M.O. & Jessen H.J.: Chemoselective Dimerization of Phosphates.
Org Lett 2016, 18(13):3222-5. PMID: 27308921.

Chi W., Li J., He B., Chai X., Xu X., Sun X., Jiang J., Feng P., Zuo J., Lin R., Rochaix J.D. & Zhang L.: DEG9, a serine protease, modulates cytokinin and light signaling by regulating the level of ARABIDOPSIS RESPONSE REGULATOR 4.
Proc Natl Acad Sci U S A 2016, 113(25):E3568-76. PMID: 27274065.

Flacio E., Engeler L., Tonolla M. & Müller P.: Spread and establishment of Aedes albopictus in southern Switzerland between 2003 and 2014: an analysis of oviposition data and weather conditions.
Parasit Vectors 2016, 9(1):304. PMID: 27229686.

Gonzalez M.R., Fleuchot B., Lauciello L., Jafari P., Applegate L.A., Raffoul W., Que Y.A. & Perron K.: Effect of Human Burn Wound Exudate on Pseudomonas aeruginosa Virulence.
mSphere 2016, 1(2). PMID: 27303724.

Douchi D., Qu Y., Longoni P., Legendre-Lefebvre L., Johnson X., Schmitz-Linneweber C. & Goldschmidt-Clermont M.: A Nucleus-Encoded Chloroplast Phosphoprotein Governs Expression of the Photosystem I Subunit PsaC in Chlamydomonas reinhardtii.
Plant Cell 2016, 28(5):1182-99. PMID: 27113776.

Wild R., Gerasimaite R., Jung J.Y., Truffault V., Pavlovic I., Schmidt A., Saiardi A., Jessen H.J., Poirier Y., Hothorn M. & Mayer A.: Control of eukaryotic phosphate homeostasis by inositol polyphosphate sensor domains.
Science 2016, 352(6288):986-90. PMID: 27080106.

Santiago J., Brandt B., Wildhagen M., Hohmann U., Hothorn L.A., Butenko M.A. & Hothorn M.: Mechanistic insight into a peptide hormone signaling complex mediating floral organ abscission.
Elife 2016, 5. PMID: 27058169.

Tilbrook K., Dubois M., Crocco C.D., Yin R., Chappuis R., Allorent G., Schmid-Siegert E., Goldschmidt-Clermont M. & Ulm R.: UV-B perception and acclimation in Chlamydomonas reinhardtii.
Plant Cell 2016, 28(4):966-83. PMID: 27020958.

Colinas M. & Fitzpatrick T.B.: Interaction between vitamin B6 metabolism, nitrogen metabolism and autoimmunity.
Plant Signal Behav 2016, Mar 28:0. PMID: 27018849.

Martinis J., Gas-Pascual E., Szydlowski N., Crèvecoeur M., Gisler A., Bürkle L. & Fitzpatrick T.B.: Long distance transport of thiamine (vitamin B1) is concomitant with that of polyamines in Arabidopsis.
Plant Physiol 2016, 171(1):542-53. PMID: 27006489.

Brandt B. & Hothorn M.: SERK co-receptor kinases.
Curr Biol 2016, 26(6):R225-6. PMID: 27003880.

Shapiguzov A., Chai X., Fucile G., Longoni P., Zhang L. & Rochaix J.D.: Activation of the Stt7/STN7 kinase through dynamic interactions with the cytochrome b6f complex.
Plant Physiol 2016, 171(1):82-92. PMID: 26941194.

Abdel-Sayed P., Kaeppeli A., Siriwardena T., Darbre T., Perron K., Jafari P., Reymond J.L., Pioletti D.P. & Applegate L.A.: Anti-Microbial Dendrimers against Multidrug-Resistant P. aeruginosa Enhance the Angiogenic Effect of Biological Burn-wound Bandages.
Sci Rep 2016, 6:22020. PMID: 26912450.

Piskurewicz U. & Lopez-Molina L.: Basic Techniques to Assess Seed Germination Responses to Abiotic Stress in Arabidopsis thaliana.
Methods Mol Biol 2016, 1398:183-96. PMID: 26867624.

Binkert M., Crocco C.D., Ekundayo B., Lau K., Raffelberg S., Tilbrook K., Yin R., Chappuis R., Schalch T. & Ulm R.: Revisiting chromatin binding of the Arabidopsis UV-B photoreceptor UVR8.
BMC Plant Biol 2016, 16(1):42. PMID: 26864020.

Colinas M., Eisenhut M., Tohge T., Pesquera M., Fernie A.R., Weber A.P. & Fitzpatrick T.B.: Balancing of B6 Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis.
Plant Cell 2016, 28(2):439-53. PMID: 26858304.

Pasche S., Calmin G., Auderset G., Crovadore J., Pelleteret P., Mauch-Mani B., Barja F., Paul B., Jermini M. & Lefort F.: Gnomoniopsis smithogilvyi causes chestnut canker symptoms in Castanea sativa shoots in Switzerland.
Fungal Genet Biol 2016, 87:9-21. PMID: 26768710.

Andrés-Barrao C., Saad M.M., Cabello Ferrete E., Bravo D., Chappuis M.L., Ortega Pérez R., Junier P., Perret X. & Barja F.: Metaproteomics and ultrastructure characterization of Komagataeibacter spp. involved in high-acid spirit vinegar production.
Food Microbiol 2016, 55:112-22. PMID: 26742622.

2015

De Giorgi J., Piskurewicz U., Loubery S., Utz-Pugin A., Bailly C., Mène-Saffrané L. & Lopez-Molina L.: An Endosperm-Associated Cuticle Is Required for Arabidopsis Seed Viability, Dormancy and Early Control of Germination.
PLoS Genet 2015, 11(12):e1005708. PMID: 26681322.

Lefebvre-Legendre L., Reifschneider O., Kollipara L., Sickmann A., Wolters D., Kück U. & Goldschmidt-Clermont M.: A pioneer protein is part of a large complex involved in trans-splicing of a group II intron in the chloroplast of Chlamydomonas reinhardtii.
Plant J 2016, 85(1):57-69. PMID: 26611495.

Munemasa S., Hauser F., Park J., Waadt R., Brandt B. & Schroeder J.I.: Mechanisms of abscisic acid-mediated control of stomatal aperture.
Curr Opin Plant Biol 2015, 28:154-62. PMID: 26599955.

Li K.T., Moulin M., Mangel N., Albersen M., Verhoeven-Duif N.M., Ma Q., Zhang P., Fitzpatrick T.B., Gruissem W. & Vanderschuren H.: Increased bioavailable vitamin B6 in field-grown transgenic cassava for dietary sufficiency.
Nat Biotechnol 2015, 33(10):1029-32. PMID: 26448082.

Longoni P., Douchi D., Cariti F., Fucile G. & Goldschmidt-Clermont M.: Phosphorylation of the Light-Harvesting Complex II Isoform Lhcb2 Is Central to State Transitions.
Plant Physiol 2015, 169(4):2874-83. PMID: 26438789.

Caine M., Horié N., Zuchuat S., Weber A., Ducret V., Linder P. & Perron K.: A 3D-DNA Molecule Made of PlayMais.
Sci Act 2015, 52(2). DOI: 10.1080/00368121.2015.1029427.

Caine M., Zuchuat S., Weber A., Ducret V., Linder P. & Perron K.: BiOutils: an interface to connect university laboratories with microbiology classes in schools.
FEMS Microbiol Lett 2015, 362(20). PMID: 26391525.

Kang J., Yim S., Choi H., Kim A., Lee K.P., Lopez-Molina L., Martinoia E. & Lee Y.: Abscisic acid transporters cooperate to control seed germination.
Nat Commun 2015, 6:8113. PMID: 26334616.

Dapp M., Reinders J., Bédiée A., Balsera C., Bucher E., Theiler G., Granier C. & Paszkowski J.: Heterosis and inbreeding depression of epigenetic Arabidopsis hybrids.
Nat Plants 2015, 1:15092. PMID: 27250257.

Martinez J., Truffault V. & Hothorn M.: Structural Determinants for Substrate Binding and Catalysis in Triphosphate Tunnel Metalloenzymes.
J Biol Chem 2015, 290(38):23348-60. PMID: 26221030.

Ulm R. & Jenkins G.I.: Q&A: How do plants sense and respond to UV-B radiation?.
BMC Biol 2015, 13(1):45. PMID: 26123292.

Colinas M. & Fitzpatrick T.B.: Natures balancing act: examining biosynthesis de novo, recycling and processing damaged vitamin B metabolites.
Curr Opin Plant Biol 2015, 25:98-106. PMID: 26005929.

Goldschmidt-Clermont M. & Bassi R.: Sharing light between two photosystems: mechanism of state transitions.
Curr Opin Plant Biol 2015, 25:71-78. PMID: 26002067.

Flacio E., Engeler L., Tonolla M., Lüthy P. & Patocchi N.: Strategies of a thirteen year surveillance programme on Aedes albopictus (Stegomyia albopicta) in southern Switzerland.
Parasit Vectors 2015, 8(1):208. PMID: 25890173.

Bergner S.V., Scholz M., Trompelt K., Barth J., Gäbelein P., Steinbeck J., Xue H., Clowez S., Fucile G., Goldschmidt-Clermont M., Fufezan C. & Hippler M.: STATE TRANSITION7-Dependent Phosphorylation Is Modulated by Changing Environmental Conditions, and Its Absence Triggers Remodeling of Photosynthetic Protein Complexes.
Plant Physiol 2015, 168(2):615-34. PMID: 25858915.

Ziegler D., Pothier J.F., Ardley J., Fossou R.K., Pflüger V., de Meyer S., Vogel G., Tonolla M., Howieson J., Reeve W. & Perret X.: Ribosomal protein biomarkers provide root nodule bacterial identification by MALDI-TOF MS.
Appl Microbiol Biotechnol 2015, 99(13):5547-62. PMID: 25776061.

Lefebvre-Legendre L., Choquet Y., Kuras R., Loubéry S., Douchi D. & Goldschmidt-Clermont M.: A Nucleus-Encoded Chloroplast Protein Regulated by Iron Availability Governs Expression of the Photosystem I Subunit PsaA in Chlamydomonas reinhardtii.
Plant Physiol 2015, 167(4):1527-40. PMID: 25673777.

Yin R., Arongaus A.B., Binkert M. & Ulm R.: Two Distinct Domains of the UVR8 Photoreceptor Interact with COP1 to Initiate UV-B Signaling in Arabidopsis.
Plant Cell 2015, 27(1):202-13. PMID: 25627067.

Ramundo S. & Rochaix J.D.: Controlling Expression of Genes in the Unicellular Alga Chlamydomonas reinhardtii with a Vitamin-Repressible Riboswitch.
Methods Enzymol 2015, 550:267-81. PMID: 25605390.

Trček J. & Barja F.: Updates on quick identification of acetic acid bacteria with a focus on the 16S-23S rRNA gene internal transcribed spacer and the analysis of cell proteins by MALDI-TOF mass spectrometry.
Int J Food Microbiol 2015, 196:137-44. PMID: 25589227.

Rochaix J.D. & Ramundo S.: Conditional repression of essential chloroplast genes: Evidence for new plastid signaling pathways.
Biochim Biophys Acta 2015, 1847(9):986-92. PMID: 25486627.

Boycheva S., Dominguez A., Rolcik J., Boller T. & Fitzpatrick T.B.: Consequences of a deficit in vitamin B6 biosynthesis de novo for hormone homeostasis and root development in Arabidopsis.
Plant Physiol 2015, 167(1):102-17. PMID: 25475669.

Sein-Echaluce V.C., González A., Napolitano M., Luque I., Barja F., Peleato M.L. & Fillat M.F.: Zur (FurB) is a key factor in the control of the oxidative stress response in Anabaena sp. PCC 7120.
Environ Microbiol 2015, 17(6):2006-17. PMID: 25244409.

2014

Simoes-Pires C., Hostettmann K., Haouala A., Cuendet M., Falquet J., Graz B. & Christen P.: Reverse pharmacology for developing an anti-malarial phytomedicine. The example of Argemone mexicana.
Int J Parasitol Drugs Drug Resist 2014, 4(3):338-46. PMID: 25516845.

Ramundo S. & Rochaix J.D.: Chloroplast unfolded protein response, a new plastid stress signaling pathway?.
Plant Signal Behav 2014, 9(10):e972874. PMID: 25482768.

Chi W., He B., Manavski N., Mao J., Ji D., Lu C., Rochaix J.D., Meurer J. & Zhang L.: RHON1 Mediates a Rho-Like Activity for Transcription Termination in Plastids of Arabidopsis thaliana.
Plant Cell 2014, 26(12):4918-32. PMID: 25480370.

Marguerettaz M., Dieppois G., Que Y.A., Ducret V., Zuchuat S. & Perron K.: Sputum containing zinc enhances carbapenem resistance, biofilm formation and virulence of Pseudomonas aeruginosa.
Microb Pathog 2014, 77C:36-41. PMID: 25448466.

Sanchez D.H. & Paszkowski J.: Heat-induced release of epigenetic silencing reveals the concealed role of an imprinted plant gene.
PLoS Genet 2014, 10(11):e1004806. PMID: 25411840.

Binkert M., Kozma-Bognár L., Terecskei K., De Veylder L., Nagy F. & Ulm R.: UV-B-Responsive Association of the Arabidopsis bZIP Transcription Factor ELONGATED HYPOCOTYL5 with Target Genes, Including Its Own Promoter.
Plant Cell 2014, 26(10):4200-13. PMID: 25351492.

Fitzpatrick T.B. & Thore S.: Complex behavior: from cannibalism to suicide in the vitamin B1 biosynthesis world.
Curr Opin Struct Biol 2014, 29C:34-43. PMID: 25260119.

Castaño F., Stauffer F., Marquinez X., Crèvecoeur M., Collin M., Pintaud J.C. & Tregear J.: Floral structure and development in the monoecious palm Gaussia attenuata (Arecaceae; Arecoideae).
Ann Bot 2014, 114(7):1483-95. PMID: 25006179.

Deakin S.P., Ducret V., Bioletto S., Perron K. & James R.W.: Modulating reconstituted high density lipoprotein functionality to target the Pseudomonas aeruginosa quorum sensing system.
Life Sci 2014, 112(1-2):68-73. PMID: 25086378.

Lefebvre-Legendre L., Merendino L., Rivier C. & Goldschmidt-Clermont M.: On the Complexity of Chloroplast RNA Metabolism: psaA Trans-splicing Can be Bypassed in Chlamydomonas.
Mol Biol Evol 2014, 31(10):2697-707. PMID: 25053803.

Ramundo S. & Rochaix J.D.: Loss of chloroplast ClpP elicits an autophagy-like response in Chlamydomonas.
Autophagy 2014, 10(9):1685-1686. PMID: 25046108.

Iwasaki M. & Paszkowski J.: Identification of genes preventing transgenerational transmission of stress-induced epigenetic states.
Proc Natl Acad Sci U S A 2014, 111(23):8547-52. PMID: 24912148.

Ramundo S., Casero D., Mühlhaus T., Hemme D., Sommer F., Crèvecoeur M., Rahire M., Schroda M., Rusch J., Goodenough U., Pellegrini M., Perez-Perez M.E., Crespo J.L., Schaad O., Civic N. & Rochaix J.D.: Conditional Depletion of the Chlamydomonas Chloroplast ClpP Protease Activates Nuclear Genes Involved in Autophagy and Plastid Protein Quality Control.
Plant Cell 2014, 26(5):2201-2222. PMID: 24879428.

Biloa Messi B., Ho R., Meli Lannang A., Cressend D., Perron K., Nkengfack A.E., Carrupt P.A., Hostettmann K. & Cuendet M.: Isolation and biological activity of compounds from Garcinia preussii.
Pharm Biol 2014, 52(6):706-11. PMID: 24824323.

Widiez T., Symeonidi A., Luo C., Lam E., Lawton M. & Rensing S.A.: The chromatin landscape of the moss Physcomitrella patens and its dynamics during development and drought stress.
Plant J 2014, 79(1):67-81. PMID: 24779858.

Vandenbussche F., Tilbrook K., Fierro A.C., Marchal K., Poelman D., Van Der Straeten D. & Ulm R.: Photoreceptor-mediated bending towards UV-B in Arabidopsis.
Mol Plant 2014, 7(6):1041-52. PMID: 24711292.

Colinas M., Shaw H.V., Loubéry S., Kaufmann M., Moulin M. & Fitzpatrick T.B.: A Pathway for Repair of NAD(P)H in Plants.
J Biol Chem 2014, 289(21):14692-706. PMID: 24706747.

Rochaix J.D., Surzycki R. & Ramundo S.: Tools for regulated gene expression in the chloroplast of chlamydomonas.
Methods Mol Biol 2014, 1132:413-24. PMID: 24599871.

Ebenhöh O., Fucile G., Finazzi G., Rochaix J.D. & Goldschmidt-Clermont M.: Short-term acclimation of the photosynthetic electron transfer chain to changing light: a mathematical model.
Philos Trans R Soc Lond B Biol Sci 2014, 369(1640):20130223. PMID: 24591710.

Boycheva S., Daviet L., Wolfender J.L. & Fitzpatrick T.B.: The rise of operon-like gene clusters in plants.
Trends Plant Sci 2014, 19(7):447-59. PMID: 24582794.

Moccand C., Boycheva S., Surriabre P., Tambasco-Studart M., Raschke M., Kaufmann M. & Fitzpatrick T.B.: The pseudoenzyme PDX1.2 boosts vitamin B6 biosynthesis under heat and oxidative stress in Arabidopsis.
J Biol Chem 2014, 289(12):8203-16. PMID: 24505140.

Rochaix J.D.: Regulation and dynamics of the light-harvesting system.
Annu Rev Plant Biol 2014, 65:287-309. PMID: 24471838.

Arnold J., Shapiguzov A., Fucile G., Rochaix J.D., Goldschmidt-Clermont M. & Eichacker L.A.: Separation of Membrane Protein Complexes by Native LDS-PAGE.
Methods Mol Biol 2014, 1072:667-76. PMID: 24136555.

2013

Baratti-Mayer D., Gayet-Ageron A., Hugonnet S., François P., Pittet-Cuenod B., Huyghe A., Bornand J.E., Gervaix A., Montandon D., Schrenzel J., Mombelli A. & Pittet D.; Geneva Study Group on Noma (GESNOMA): Risk factors for noma disease: a 6-year, prospective, matched case-control study in Niger.
Lancet Glob Health 2013, 1(2):e87-96. PMID: 25104163.

Lieberman-Lazarovich M., Melamed-Bessudo C., de Pater S. & Levy A.A.: Epigenetic alterations at genomic loci modified by gene targeting in Arabidopsis thaliana.
PLoS One 2013, 8(12):e85383. PMID: 24386472.

Neteler M., Metz M., Rocchini D., Rizzoli A., Flacio E., Engeler L., Guidi V., Lüthy P. & Tonolla M.: Is Switzerland Suitable for the Invasion ofAedes albopictus?.
PLoS One 2013, 8(12):e82090. PMID: 24349190.

Loizeau K., Qu Y., Depp S., Fiechter V., Ruwe H., Lefebvre-Legendre L., Schmitz-Linneweber C. & Goldschmidt-Clermont M.: Small RNAs reveal two target sites of the RNA-maturation factor Mbb1 in the chloroplast of Chlamydomonas.
Nucleic Acids Res 2013. PMID: 24335082.

Dinc E., Ramundo S., Croce R. & Rochaix J.D.: Repressible chloroplast gene expression in Chlamydomonas: A new tool for the study of the photosynthetic apparatus.
Biochim Biophys Acta 2013. PMID: 24333785.

Lee K.P. & Lopez-Molina L.: A seed coat bedding assay to genetically explore in vitro how the endosperm controls seed germination in Arabidopsis thaliana.
J Vis Exp 2013, (81):e50732. PMID: 24300527.

Heijde M., Binkert M., Yin R., Ares-Orpel F., Rizzini L., Van De Slijke E., Persiau G., Nolf J., Gevaert K., De Jaeger G. & Ulm R.: Constitutively active UVR8 photoreceptor variant in Arabidopsis.
Proc Natl Acad Sci U S A 2013, 110(50):20326-31. PMID: 24277841.

Coquille S., Roux C., Mehta A., Begley T.P., Fitzpatrick T.B. & Thore S.: High-resolution crystal structure of the eukaryotic HMP-P synthase (THIC) from Arabidopsis thaliana.
J Struct Biol 2013, 184(3):438-44. PMID: 24161603.

Rochaix J.D.: Fine-Tuning Photosynthesis.
Science 2013, 342(6154):50-51. PMID: 24092720.

Huyghe A., François P., Mombelli A., Tangomo M., Girard M., Baratti-Mayer D., Bolivar I., Pittet D. & Schrenzel J; Geneva Study Group on Noma: Microarray analysis of microbiota of gingival lesions in noma patients.
PLoS Negl Trop Dis 2013, 7(9):e2453. PMID: 24086784.

Moulin M., Nguyen G.T., Scaife M.A., Smith A.G. & Fitzpatrick T.B.: Analysis of Chlamydomonas thiamin metabolism in vivo reveals riboswitch plasticity.
Proc Natl Acad Sci U S A 2013, 110(36):14622-7. PMID: 23959877.

Guidi V., Lüthy P. & Tonolla M.: Comparison between diflubenzuron and a Bacillus thuringiensis israelensis- and Lysinibacillus sphaericus-based formulation for the control of mosquito larvae in urban catch basins in Switzerland.
J Am Mosq Control Assoc 2013, 29(2):138-45. PMID: 23923328.

Tilbrook K., Arongaus A.B., Binkert M., Heijde M., Yin R. & Ulm R.: The UVR8 UV-B Photoreceptor: Perception, Signaling and Response.
Arabidopsis Book 2013, 11:e0164. PMID: 23864838.

Reinders J., Mirouze M., Nicolet J. & Paszkowski J.: Parent-of-origin control of transgenerational retrotransposon proliferation in Arabidopsis.
EMBO Rep 2013. PMID: 23835507.

Pourcel L., Moulin M. & Fitzpatrick T.B.: Examining strategies to facilitate vitamin B1 biofortification of plants by genetic engineering.
Front Plant Sci 2013, 4:160. PMID: 23755056.

Vanderschuren H., Boycheva S., Li K.T., Szydlowski N., Gruissem W. & Fitzpatrick T.B.: Strategies for vitamin B6 biofortification of plants: a dual role as a micronutrient and a stress protectant.
Front Plant Sci 2013, 4:143. PMID: 23734155.

Crefcoeur R.P., Yin R., Ulm R. & Halazonetis T.D.: Ultraviolet-B-mediated induction of protein-protein interactions in mammalian cells.
Nat Commun 2013, 4:1779. PMID: 23653191.

Müller K., Engesser R., Schulz S., Steinberg T., Tomakidi P., Weber C.C., Ulm R., Timmer J., Zurbriggen M.D. & Weber W.: Multi-chromatic control of mammalian gene expression and signaling.
Nucleic Acids Res 2013, 41(12):e124. PMID: 23625964.

Szydlowski N., Bürkle L., Pourcel L., Moulin M., Stolz J. & Fitzpatrick T.B.: Recycling of pyridoxine (vitamin B6) by PUP1 in Arabidopsis.
Plant J 2013, 75(1):40-52. PMID: 23551747.

Rochaix J.D.: Surprising roles for bilins in a green alga.
Proc Natl Acad Sci U S A 2013, 110(9):3218-9. PMID: 23412335.

Guidi V., Lehner A., Lüthy P. & Tonolla M.: Dynamics of Bacillus thuringiensis var. israelensis and Lysinibacillus sphaericus Spores in Urban Catch Basins after Simultaneous Application against Mosquito Larvae.
PLoS One 2013, 8(2):e55658. PMID: 23390547.

Rochaix J.D.: Redox regulation of thylakoid protein kinases and photosynthetic gene expression.
Antioxid Redox Signal 2013, 18(16):2184-201. PMID: 23339452.

Storelli N., Peduzzi S., Saad M.M., Frigaard N.U., Perret X. & Tonolla M.: CO2 assimilation in the chemocline of Lake Cadagno is dominated by a few types of phototrophic purple sulfur bacteria.
FEMS Microbiol Ecol 2013, 84(2):421-32. PMID: 23330958.

Ramundo S., Rahire M., Schaad O. & Rochaix J.D.: Repression of essential chloroplast genes reveals new signaling pathways and regulatory feedback loops in chlamydomonas.
Plant Cell 2013, 25(1):167-86. PMID: 23292734.

Heijde M. & Ulm R.: Reversion of the Arabidopsis UV-B photoreceptor UVR8 to the homodimeric ground state.
Proc Natl Acad Sci U S A 2013, 110(3):1113-8. PMID: 23277547.

González Besteiro M.A. & Ulm R.: ATR and MKP1 play distinct roles in response to UV-B stress in Arabidopsis.
Plant J 2013, 73(6):1034-43. PMID: 23237049.

González Besteiro M.A. & Ulm R.: Phosphorylation and stabilization of Arabidopsis MAP kinase phosphatase 1 in response to UV-B stress.
J Biol Chem 2013, 288(1):480-6. PMID: 23188831.

Andrés-Barrao C., Benagli C., Chappuis M., Ortega Pérez R., Tonolla M. & Barja F.: Rapid identification of acetic acid bacteria using MALDI-TOF mass spectrometry fingerprinting.
Syst Appl Microbiol 2013, 36(2):75-81. PMID: 23182036.

Shanmugabalaji V., Besagni C., Piller L.E., Douet V., Ruf S., Bock R. & Kessler F.: Dual targeting of a mature plastoglobulin/fibrillin fusion protein to chloroplast plastoglobules and thylakoids in transplastomic tobacco plants.
Plant Mol Biol 2013, 81(1-2):13-25. PMID: 23086498.

2012

Rasheed-Depardieu C., Parent C., Crèvecoeur M., Parelle J., Tatin-Froux F., Le Provost G. & Capelli N.: Identification and expression of nine oak aquaporin genes in the primary root axis of two oak species, Quercus petraea and Quercus robur.
PLoS One 2012, 7(12):e51838. PMID: 23284785.

Lee K.P. & Lopez-Molina L.: Control of seed germination in the shade.
Cell Cycle 2012, 11(24):4489-90. PMID: 23165205.

Rochaix J.D., Lemeille S., Shapiguzov A., Samol I., Fucile G., Willig A. & Goldschmidt-Clermont M.: Protein kinases and phosphatases involved in the acclimation of the photosynthetic apparatus to a changing light environment.
Philos Trans R Soc Lond B Biol Sci 2012, 367(1608):3466-74. PMID: 23148273.

Paszkowski J. & Martienssen R.A.: Cell signaling and gene regulation.
Curr Opin Plant Biol 2012, 15(5):493-5. PMID: 23141671.

Coquille S., Roux C., Fitzpatrick T.B. & Thore S.: The last piece in the vitamin B1 biosynthesis puzzle: structural and functional insight into yeast 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P) synthase.
J Biol Chem 2012, 287(50):42333-43. PMID: 23048037.

Lee K.P., Piskurewicz U., Tureckova V., Carat S., Chappuis R., Strnad M., Fankhauser C. & Lopez-Molina L.: Spatially and genetically distinct control of seed germination by phytochromes A and B.
Genes Dev 2012, 26(17):1984-1996. PMID: 22948663.

Saad M.M., Crevecoeur M., Masson-Boivin C. & Perret X.: The type 3 protein secretion system of Cupriavidus taiwanensis strain LMG19424 compromises symbiosis with Leucaena leucocephala.
Appl Environ Microbiol 2012, 78(20):7476-7479. PMID: 22865066.

Rahire M., Laroche F., Cerutti L. & Rochaix J.D.: Identification of an OPR protein involved in the translation initiation of the PsaB subunit of photosystem I.
Plant J 2012, 72(4):652-661. PMID: 22817760.

Formighieri C., Ceol M., Bonente G., Rochaix J.D. & Bassi R.: Retrograde Signaling and Photoprotection in a gun4 Mutant of Chlamydomonas reinhardtii.
Molecular plant 2012, 5(6):1242-1262. PMID: 22767629.

Samol I., Shapiguzov A., Ingelsson B., Fucile G., Crevecoeur M., Vener A.V., Rochaix J.D. & Goldschmidt-Clermont M.: Identification of a photosystem II phosphatase involved in light acclimation in Arabidopsis.
Plant Cell 2012, 24(6):2596-2609. PMID: 22706287.

Dieppois G., Ducret V., Caille O. & Perron K.: The Transcriptional Regulator CzcR Modulates Antibiotic Resistance and Quorum Sensing in Pseudomonas aeruginosa.
PLoS One 2012, 7(5):e38148. PMID: 22666466.

Ziegler D., Mariotti A., Pfluger V., Saad M., Vogel G., Tonolla M. & Perret X.: In situ identification of plant-invasive bacteria with maldi-tof mass spectrometry.
PLoS One 2012, 7(5):e37189. PMID: 22615938.

Viczian A., Adam E., Wolf I., Bindics J., Kircher S., Heijde M., Ulm R., Schafer E. & Nagy F.: A short amino-terminal part of Arabidopsis phytochrome a induces constitutive photomorphogenic response.
Molecular plant 2012, 5(3):103-115. PMID: 22498774.

Mirouze M., Lieberman-Lazarovich M., Aversano R., Bucher E., Nicolet J., Reinders J. & Paszkowski J.: Loss of DNA methylation affects the recombination landscape in Arabidopsis.
Proc Natl Acad Sci U S A 2012, 109(15):5880-5885. PMID: 22451936.

Peduzzi S., Storelli N., Welsh A., Peduzzi R., Hahn D., Perret X. & Tonolla M.: Candidatus "Thiodictyon syntrophicum", sp. nov., a new purple sulfur bacterium isolated from the chemocline of Lake Cadagno forming aggregates and specific associations with Desulfocapsa sp.
Systematic and applied microbiology 2012, 35(3):139-144. PMID: 22386960.

Fitzpatrick T.B., Basset G.J., Borel P., Carrari F., Dellapenna D., Fraser P.D., Hellmann H., Osorio S., Rothan C., Valpuesta V., Caris-Veyrat C. & Fernie A.R.: Vitamin deficiencies in humans: can plant science help?
Plant Cell 2012, 24(2):395-414. PMID: 22374394.

Oukarroum A., Strasser R.J. & Schansker G.: Heat stress and the photosynthetic electron transport chain of the lichen Parmelina tiliacea (Hoffm.) Ach. in the dry and the wet state: differences and similarities with the heat stress response of higher plants.
Photosynth Res 2012, 111(3):303-314. PMID: 22373736.

Nishimura T., Molinard G., Petty T.J., Broger L., Gabus C., Halazonetis T.D., Thore S. & Paszkowski J.: Structural Basis of Transcriptional Gene Silencing Mediated by Arabidopsis MOM1.
PLoS Genet 2012, 8(2):e1002484. PMID: 22346760.

Heijde M. & Ulm R.: UV-B photoreceptor-mediated signalling in plants.
Trends Plant Sci 2012, 17(4):230-237. PMID: 22326562.

Lang-Mladek C., Xie L., Nigam N., Chumak N., Binkert M., Neubert S. & Hauser M.T.: UV-B signaling pathways and fluence rate dependent transcriptional regulation of ARIADNE12.
Physiol Plant 2012, 145(4):527-39. PMID: 22188380.

2011

Thevenon F., Regier N., Benagli C., Tonolla M., Adatte T., Wildi W. & Pote J.: Characterization of fecal indicator bacteria in sediments cores from the largest freshwater lake of Western Europe (Lake Geneva, Switzerland).
Ecotoxicol Environ Saf 2011. PMID: 22209635.

Andres-Barrao C., Saad M.M., Chappuis M.L., Boffa M., Perret X., Perez R.O. & Barja F.: Proteome analysis of Acetobacter pasteurianus during acetic acid fermentation.
J Proteomics 2011. PMID: 22155126.

Ceppi M.G., Oukarroum A., Cicek N., Strasser R.J. & Schansker G.: The IP amplitude of the fluorescence rise OJIP is sensitive to changes in the photosystem I content of leaves: a study on plants exposed to magnesium and sulfate deficiencies, drought stress and salt stress.
Physiol Plant 2011. PMID: 22121914.

Willig A., Shapiguzov A., Goldschmidt-Clermont M. & Rochaix J.D.: The Phosphorylation Status of the Chloroplast Protein Kinase STN7 of Arabidopsis Affects Its Turnover.
Plant Physiol 2011, 157(4):2102-2107. PMID: 21976483.

Stephan R., Cernela N., Ziegler D., Pfluger V., Tonolla M., Ravasi D., Fredriksson-Ahomaa M. & Hachler H.: Rapid species specific identification and subtyping of Yersinia enterocolitica by MALDI-TOF Mass spectrometry.
J Microbiol Methods 2011. PMID: 21914454.

Piskurewicz U. & Lopez-Molina L.: Isolation of genetic material from Arabidopsis seeds.
Methods Mol Biol 2011, 773:151-164. PMID: 21898255.

Gonzalez Besteiro M.A., Bartels S., Albert A. & Ulm R.: Arabidopsis MAP kinase phosphatase 1 and its target MAP kinases 3 and 6 antagonistically determine UV-B stress tolerance, independent of the UVR8 photoreceptor pathway.
Plant J 2011. PMID: 21790814.

Reiland S., Finazzi G., Endler A., Willig A., Baerenfaller K., Grossmann J., Gerrits B., Rutishauser D., Gruissem W., Rochaix J.D. & Baginsky S.: Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).
Proc Natl Acad Sci U S A 2011, 108(31):12955-12960. PMID: 21768351.

Fumeaux C., Bakkou N., Kopcinska J., Golinowski W., Westenberg D.J., Muller P. & Perret X.: Functional analysis of the nifQdctA1y4vGHIJ operon of Sinorhizobium fredii strain NGR234 using a transposon with a NifA-dependent read-out promoter.
Microbiology 2011. PMID: 21719545.

Ohno Y., Narangajavana J., Yamamoto A., Hattori T., Kagaya Y., Paszkowski J., Gruissem W., Hennig L. & Takeda S.: Ectopic Gene Expression and Organogenesis in Arabidopsis Mutants Missing BRU1 Required for Genome Maintenance.
Genetics 2011. PMID: 21705754.

Rochaix J.D.: Reprint of: Regulation of photosynthetic electron transport.
Biochim Biophys Acta 2011, 1807(8):878-886. PMID: 21605544.

Cotado-Sampayo M., Ortega Perez R., Ojha M., Seum C. & Barja F.: Characterization of Neurospora crassa alpha-actinin.
Curr Microbiol 2011, 63(1):100-105. PMID: 21598047.

Fankhauser C. & Ulm R.: Light-regulated interactions with SPA proteins underlie cryptochrome-mediated gene expression.
Genes Dev 2011, 25(10):1004-1009. PMID: 21576261.

Rizzini L., Favory J.J., Cloix C., Faggionato D., O'Hara A., Kaiserli E., Baumeister R., Schafer E., Nagy F., Jenkins G.I. & Ulm R.: Perception of UV-B by the Arabidopsis UVR8 protein.
Science 2011, 332(6025):103-106. PMID: 21454788.

Mirouze M. & Paszkowski J.: Epigenetic contribution to stress adaptation in plants.
Curr Opin Plant Biol 2011, 14(3):267-274. PMID: 21450514.

Anderson J.C., Bartels S., Besteiro M.A., Shahollari B., Ulm R. & Peck S.C.: Arabidopsis MAP Kinase Phosphatase 1 (AtMKP1) negatively regulates MPK6-mediated PAMP responses and resistance against bacteria.
Plant J 2011, 67(2):258-268. PMID: 21447069.

Andres-Barrao C., Falquet L., Calderon-Copete S.P., Descombes P., Ortega Perez R. & Barja F.: Genome sequences of the high-acetic acid-resistant bacteria Gluconacetobacter europaeus LMG 18890T and G. europaeus LMG 18494 (reference strains), G. europaeus 5P3, and Gluconacetobacter oboediens 174Bp2 (isolated from vinegar).
J Bacteriol 2011, 193(10):2670-2671. PMID: 21441523.

Day A. & Goldschmidt-Clermont M.: The chloroplast transformation toolbox: selectable markers and marker removal.
Plant Biotechnol J 2011, 9(5):540-553. PMID: 21426476.

Parent C., Crevecoeur M., Capelli N. & Dat J.F.: Contrasting growth and adaptive responses of two oak species to flooding stress: role of non-symbiotic haemoglobin.
Plant Cell Environ 2011, 34(7):1113-1126. PMID: 21410709.

Ito H., Gaubert H., Bucher E., Mirouze M., Vaillant I. & Paszkowski J.: An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.
Nature 2011, 472(7341):115-119. PMID: 21399627.

Feher B., Kozma-Bognar L., Kevei E., Hajdu A., Binkert M., Davis S.J., Schafer E., Ulm R. & Nagy F.: Functional interaction of the circadian clock and UV RESISTANCE LOCUS 8-controlled UV-B signaling pathways in Arabidopsis thaliana.
Plant J 2011, 67(1):37-48. PMID: 21395889.

Paszkowski J. & Grossniklaus U.: Selected aspects of transgenerational epigenetic inheritance and resetting in plants.
Curr Opin Plant Biol 2011, 14(2):195-203. PMID: 21333585.

Moccand C., Kaufmann M. & Fitzpatrick T.B.: It takes two to tango: defining an essential second active site in pyridoxal 5'-phosphate synthase.
PLoS One 2011, 6(1):e16042. PMID: 21283685.

Raschke M., Boycheva S., Crevecoeur M., Nunes-Nesi A., Witt S., Fernie A.R., Amrhein N. & Fitzpatrick T.B.: Enhanced levels of vitamin B(6) increase aerial organ size and positively affect stress tolerance in Arabidopsis.
Plant J 2011, 66(3):414-432. PMID: 21241390.

Rochaix J.D.: Assembly of the photosynthetic apparatus.
Plant Physiol 2011, 155(4):1493-1500. PMID: 21239619.

Rochaix J.D.: Regulation of photosynthetic electron transport.
Biochim Biophys Acta 2011, 1807(3):375-383. PMID: 21118674.

Michelet L., Lefebvre-Legendre L., Burr S.E., Rochaix J.D. & Goldschmidt-Clermont M.: Enhanced chloroplast transgene expression in a nuclear mutant of Chlamydomonas.
Plant Biotechnol J 2011, 9(5):565-574. PMID: 20809927.

Peduzzi S., Welsh A., Demarta A., Decristophoris P., Peduzzi R., Hahn D. & Tonolla M.: Thiocystis chemoclinalis sp. nov. and Thiocystis cadagnonensis sp. nov., motile purple sulfur bacteria isolated from the chemocline of a meromictic lake.
Int J Syst Evol Microbiol 2011, 61(Pt 7):1682-7. PMID: 20729307.

Previous years

Some of our groups list their publications on their website:

Fitzpatrick's lab

Goldschmidt's and Rochaix's lab

Jeanmonod's lab (each scientist separately)

Ulm's lab

Unit of Microbiology: Perret, Perron, Tonolla

Other units:  Degli Agosti

 

 

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