2024

Fitzpatrick T.B., Dalvit I., Chang F.H., Wang K., Fudge J.B., Chang S.H., Maillot B. & Gruissem W.:
Vitamin B₁ enhancement in the endosperm of rice through thiamine sequestration.
Plant Biotechnol J 2024. PMID: 38536763. DOI: 10.1111/pbi.14348.

Buettcher M., Egli A., Albini S., Altpeter E., Labutin A., Guidi V., Tonolla M., Lienhard R., Opota O., Schmid P., Wuethrich T. & Schmidt KM; on behalf of the TULAR-CH working group:
Tularemia on the rise in Switzerland? A one health approach is needed!.
Infection 2024. PMID: 38480644. DOI: 10.1007/s15010-024-02218-9.

Wu R., Liu Z., Sun S., Qin A., Liu H., Zhou Y., Li W., Liu Y., Hu M., Yang J., Rochaix J.D., An G., Herrera-Estrella L., Tran L.P. & Sun X.:
Identification of bZIP Transcription Factors That Regulate the Development of Leaf Epidermal Cells in Arabidopsis thaliana by Single-Cell RNA Sequencing.
Int J Mol Sci 2024, 25(5):2553. PMID: 38473801. DOI: 10.3390/ijms25052553.

Fitzpatrick T.B.:
B Vitamins: An Update on Their Importance for Plant Homeostasis.
Annu Rev Plant Biol 2024. PMID: 38424064. DOI: 10.1146/annurev-arplant-060223-025336.

Jordan O., Gan B.H., Alwan S., Perron K., Sublet E., Ducret V., Ye H., Borchard G., Reymond J.L. & Patrulea V.:
Highly Potent Cationic Chitosan Derivatives Coupled to Antimicrobial Peptide Dendrimers to Combat Pseudomonas Aeruginosa.
Adv Healthc Mater 2024, e2304118. PMID: 38412457. DOI: 10.1002/adhm.202304118.

Segovia-Campos I., Kanellakopoulos A., Barrozo I.J., Fock-Chin-Ming E., Filella M., Fontaine A.B., Pallada S., Triscone G., Perron K. & Ariztegui D.:
Strontium-90 pollution can be bioremediated with the green microalga Tetraselmis chui.
Environ Sci Process Impacts 2024, 26(3):622-631. PMID: 38334136. DOI: 10.1039/d3em00336a.

Piskurewicz U., Glauser G. & Lopez-Molina L.:
Endospermic brassinosteroids moderate seed thermoinhibition responses in Arabidopsis thaliana.
New Phytol 2024, 241(6):2320-2325. PMID: 38130053. DOI: 10.1111/nph.19491.

Chai X., Wang X., Rong L., Luo M., Yuan L., Li Q., He B., Jiang J., Ji D., Ouyang M., Lu Q., Zhang L., Rochaix J.D. & Chi W.:
The translocon protein FtsHi1 is an ATP-dependent DNA/RNA helicase that prevents R-loop accumulation in chloroplasts.
New Phytol 2024, 241(5):2209-2226. PMID: 38084045.

Chen S., Podolec R., Arongaus A.B., Fuchs C., Loubéry S., Demarsy E. & Ulm R.:
Functional divergence of Arabidopsis REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 and 2 in repression of flowering.
Plant Physiol 2024, 194(3):1563-1576. PMID: 37956407. DOI: 10.1093/plphys/kiad606.

2023

Di Nezio F., Roman S., Buetti-Dinh A., Sepúlveda Steiner O., Bouffard D., Sengupta A. & Storelli N.:
Motile bacteria leverage bioconvection for eco-physiological benefits in a natural aquatic environment.
Front Microbiol 2023, 14:1253009. PMID: 38163082. DOI: 10.3389/fmicb.2023.1253009.

Strobbe S., Verstraete J., Fitzpatrick T.B., Stove C. & Van Der Straeten D.:
A protocol for a turbidimetric assay using a Saccharomyces cerevisiae thiamin biosynthesis mutant to estimate total vitamin B₁ content in plant tissue samples.
Plant Methods 2023, 19(1):144. PMID: 38093342. DOI: 10.1186/s13007-023-01117-8.

Jousson A., Naciri Y., Christe C., Marazzi B. & Stauffer F.:
Not just females and males: Unravelling the complex sex determinism of the hemp palm, Trachycarpus fortunei.
Am J Bot 2023, 110(12):e16257. PMID: 38014995. DOI: 10.1002/ajb2.16257.

Stockenhuber R., Akiyama R., Tissot N., Milosavljevic S., Yamazaki M., Wyler M., Arongaus A.B., Podolec R., Sato Y., Widmer A., Ulm R. & Shimizu K.K.:
UV RESISTANCE LOCUS 8-Mediated UV-B Response Is Required Alongside CRYPTOCHROME 1 for Plant Survival in Sunlight under Field Conditions.
Plant Cell Physiol 2024, 65(1):35-48. PMID: 37757822. DOI: 10.1093/pcp/pcad113.

Hendriks K.P., Kiefer C., Al-Shehbaz I.A., Bailey C.D., Hooft van Huysduynen A., Nikolov L.A., Nauheimer L., Zuntini A.R., German D.A., Franzke A., Koch M.A., Lysak M.A., Toro-Núñez Ó., Özüdoğru B., Invernón V.R., Walden N., Maurin O., Hay N.M., Shushkov P., Mandáková T., Schranz M.E., Thulin M., Windham M.D., Rešetnik I., Španiel S., Ly E., Pires J.C., Harkess A., Neuffer B., Vogt R., Bräuchler C., Rainer H., Janssens S.B., Schmull M., Forrest A., Guggisberg A., Zmarzty S., Lepschi B.J., Scarlett N., Stauffer F.W., Schönberger I., Heenan P., Baker W.J., Forest F., Mummenhoff K. & Lens F.:
Global Brassicaceae phylogeny based on filtering of 1,000-gene dataset.
Curr Biol 2023, 33(19):4052-4068.e6. PMID: 37659415. DOI: 10.1016/j.cub.2023.08.026.

Steensma P., Eisenhut M., Colinas M., Rosado-Souza L., Fernie A.R., Weber A.P.M. & Fitzpatrick T.B.:
PYRIDOX(AM)INE 5'-PHOSPHATE OXIDASE3 of Arabidopsis thaliana maintains carbon/nitrogen balance in distinct environmental conditions.
Plant Physiol 2023, 193(2):1433-1455. PMID: 37453131. DOI: 10.1093/plphys/kiad411.

Alfattani A., Queiroz E.F., Marcourt L., Leoni S., Stien D., Hofstetter V., Gindro K., Perron K. & Wolfender J.L.:
One step bio-guided isolation of secondary metabolites from the endophytic fungus Penicillium crustosum using high-resolution semi-preparative HPLC.
Comb Chem High Throughput Screen 2023. PMID: 37424340. DOI: 10.2174/1386207326666230707110651.

Pouchon C. & Boluda C.G.:
REFMAKER: Make your own reference to target nuclear loci in low coverage genome skimming libraries. Phylogenomic application in Sapotaceae.
Mol Phylogenet Evol 2023, 186:107826. PMID: 37257798. DOI: 10.1016/j.ympev.2023.107826.

Robe K. & Barberon M.:
Nutrient carriers at the heart of plant nutrition and sensing.
Curr Opin Plant Biol 2023, 74:102376. PMID: 37182415. DOI: 10.1016/j.pbi.2023.102376.

Robe K. & Barberon M.:
NPFs rule suberization.
Nat Plants 2023, 9(5):689-690. PMID: 37142753. DOI: 10.1038/s41477-023-01411-2.

Neubus Claus L.A., Liu D., Hohmann U., Vukašinović N., Pleskot R., Liu J., Schiffner A., Jaillais Y., Wu G., Wolf S., Van Damme D., Hothorn M. & Russinova E.:
BRASSINOSTEROID INSENSITIVE1 internalization can occur independent of ligand binding.
Plant Physiol 2023, 192(1):65-76. PMID: 36617237. DOI: 10.1093/plphys/kiad005.

Piskurewicz U., Sentandreu M., Iwasaki M., Glauser G. & Lopez-Molina L.:
The Arabidopsis endosperm is a temperature-sensing tissue that implements seed thermoinhibition through phyB.
Nat Commun 2023, 14(1):1202. PMID: 36882415. DOI: 10.1038/s41467-023-36903-4.

Noordally Z., Land L., Trichtinger C., Dalvit I., de Meyer M., Wang K. & Fitzpatrick T.B.:
Clock and riboswitch control of THIC in tandem are essential for appropriate gauging of TDP levels under light/dark cycles in Arabidopsis.
iScience 2023, 26(3):106134. PMID: 36866249. DOI: 10.1016/j.isci.2023.106134.

Medina-Fraga A.L., Chinen L.A., Demkura P.V., Lichy M.Z., Gershenzon J., Ballaré C.L. & Crocco C.D.:
AtBBX29 integrates photomorphogenesis and defense responses in Arabidopsis.
Photochem Photobiol Sci 2023, 22(6):1475-1489. PMID: 36807054. DOI: 10.1007/s43630-023-00391-8.

Guan Z., Chen J., Liu R., Chen Y., Xing Q., Du Z., Cheng M., Hu J., Zhang W., Mei W., Wan B., Wang Q., Zhang J., Cheng P., Cai H., Cao J., Zhang D., Yan J., Yin P., Hothorn M. & Liu Z.:
The cytoplasmic synthesis and coupled membrane translocation of eukaryotic polyphosphate by signal-activated VTC complex.
Nat Commun 2023, 14(1):718. PMID: 36759618. DOI: 10.1038/s41467-023-36466-4.

Liu H., Li A., Rochaix J.D. & Liu Z.:
Architecture of chloroplast TOC-TIC translocon supercomplex.
Nature 2023, 615(7951):349-357. PMID: 36702157. DOI: 10.1038/s41586-023-05744-y.

Sandoz A., Ducret V., Gottwald G.A., Vilmart G. & Perron K.:
SINDy for delay-differential equations: application to model bacterial zinc response.
Proc R Soc A 2023, 479:20220556. DOI: 10.1098/rspa.2022.0556.

Ducret V., Gonzalez D., Leoni S., Valentini M. & Perron K.:
A Zur-mediated transcriptional regulation of the zinc export system in Pseudomonas aeruginosa.
BMC Microbiol 2023, 23(1):6. PMID: 36617571. DOI: 10.1186/s12866-022-02750-4.

Claus L.A.N., Liu D., Hohmann U., Vukašinović N., Pleskot R., Liu J., Schiffner A., Jaillais Y., Wu G., Wolf S., Van Damme D., Hothorn M. & Russinova E.:
BRASSINOSTEROID INSENSITIVE1 internalization can occur independent of ligand binding.
Plant Physiol 2023, kiad005. PMID: 36617237. DOI: 10.1093/plphys/kiad005.

Brestovitsky A., Iwasaki M., Cho J., Adulyanukosol N., Paszkowski J. & Catoni M.:
Specific suppression of long terminal repeat retrotransposon mobilization in plants.
Plant Physiol 2023, 191(4):2245-2255. PMID: 36583226. DOI: 10.1093/plphys/kiac605.

Ducret V., Gonzalez D. & Perron K.:
Zinc homeostasis in Pseudomonas.
Biometals 2023, 36(4):729-744. PMID: 36472780. DOI: 10.1007/s10534-022-00475-5.

2022

Dong C., Qu G., Guo J., Wei F., Gao S., Sun Z., Jin L., Sun X., Rochaix J.D., Miao Y. & Wang R.:
Rational design of geranylgeranyl diphosphate synthase enhances carotenoid production and improves photosynthetic efficiency in Nicotiana tabacum.
Sci Bull (Beijing) 2022, 67(3):315-327. PMID: 36546080. DOI: 10.1016/j.scib.2021.07.003.

Putra N.E., Leeflang M.A., Ducret V., Patrulea V., Fratila-Apachitei L.E., Perron K., Ye H., Zhou J., Apachitei I. & Zadpoor A.A.:
Preventing Antibiotic-Resistant Infections: Additively Manufactured Porous Ti6Al4V Biofunctionalized with Ag and Fe Nanoparticles.
Int J Mol Sci 2022, 23(21):13239. PMID: 36362029. DOI: 10.3390/ijms232113239.

Garcés-Pastor S., Coissac E., Lavergne S., Schwörer C., Theurillat J.P., Heintzman P.D., Wangensteen O.S., Tinner W., Rey F., Heer M., Rutzer A., Walsh K., Lammers Y., Brown A.G., Goslar T., Rijal D.P., Karger D.N., Pellissier L; PhyloAlps Consortium, Heiri O. & Alsos I.G.:
High resolution ancient sedimentary DNA shows that alpine plant diversity is associated with human land use and climate change.
Nat Commun 2022, 13(1):6559. PMID: 36333301. DOI: 10.1038/s41467-022-34010-4.

Ducret V., Perron K. & Valentini M.:
Role of Two-Component System Networks in Pseudomonas aeruginosa Pathogenesis.
Adv Exp Med Biol 2022, 1386:371-395. PMID: 36258080. DOI: 10.1007/978-3-031-08491-1_14.

López M.E., Roquis D., Becker C., Denoyes B. & Bucher E.:
DNA methylation dynamics during stress response in woodland strawberry (Fragaria vesca).
Hortic Res 2022, 9:uhac174. PMID: 36204205. DOI: 10.1093/hr/uhac174.

Segovia-Campos I., Filella M., Perron K. & Ariztegui D.:
High calcium and strontium uptake by the green microalga Tetraselmis chui is related to micropearl formation and cell growth.
Environ Microbiol Rep 2022, 15(1):38-50. PMID: 36151741. DOI: 10.1111/1758-2229.13124.

Jan M., Liu Z., Rochaix J.D. & Sun X.:
Retrograde and anterograde signaling in the crosstalk between chloroplast and nucleus.
Front Plant Sci 2022, 13:980237. PMID: 36119624. DOI: 10.3389/fpls.2022.980237.

Rochaix J.D.:
Reminiscences of Robert Paul Levine (1927-2022).
Photosynth Res 2022, 154(2):225-228. PMID: 36107368. DOI: 10.1007/s11120-022-00927-6.

Fang F., Lin L., Zhang Q., Lu M., Skvortsova M.Y., Podolec R., Zhang Q., Pi J., Zhang C., Ulm R. & Yin R.:
Mechanisms of UV-B light-induced photoreceptor UVR8 nuclear localization dynamics.
New Phytol 2022, 236(5):1824-1837. PMID: 36089828. DOI: 10.1111/nph.18468.

Pesquera M., Martinez J., Maillot B., Wang K., Hofmann M., Raia P., Loubéry S., Steensma P., Hothorn M. & Fitzpatrick T.B.:
Structural and functional studies of Arabidopsis thaliana triphosphate tunnel metalloenzymes reveal roles for additional domains.
J Biol Chem 2022, 102438. PMID: 36049521. DOI: 10.1016/j.jbc.2022.102438.

Naciri Y., Toprak Z., Prentice H.C., Hugot L., Troia A., Burgarella C., Gradaille J.L. & Jeanmonod D.:
Convergent Morphological Evolution in Silene Sect. Italicae (Caryophyllaceae) in the Mediterranean Basin.
Front Plant Sci 2022, 13:695958. PMID: 35903238. DOI: 10.3389/fpls.2022.695958.

Lu H.P., Gao Q., Han J.P., Guo X.H., Wang Q., Altosaar I., Barberon M., Liu J.X., Gatehouse A.M.R. & Shu Q.Y.:
An ABA-serotonin module regulates root suberization and salinity tolerance.
New Phytol 2022, 236(3):958-973. PMID: 35872572. DOI: 10.1111/nph.18397.

Peng H., Mirouze M. & Bucher E.:
Extrachromosomal circular DNA: A neglected nucleic acid molecule in plants.
Curr Opin Plant Biol 2022, 69:102263. PMID: 35872391. DOI: 10.1016/j.pbi.2022.102263.

Saini J.S., Hassler C., Cable R., Fourquez M., Danza F., Roman S., Tonolla M., Storelli N., Jacquet S., Zdobnov E.M. & Duhaime M.B.:
Bacterial, Phytoplankton, and Viral Distributions and Their Biogeochemical Contexts in Meromictic Lake Cadagno Offer Insights into the Proterozoic Ocean Microbial Loop.
mBio 2022, 13(4):e0005222. PMID: 35726916. DOI: 10.1128/mbio.00052-22.

Huber R., Marcourt L., Quiros-Guerrero L.M., Luscher A., Schnee S., Michellod E., Ducret V., Kohler T., Perron K., Wolfender J.L., Gindro K. & Ferreira Queiroz E.:
Chiral Separation of Stilbene Dimers Generated by Biotransformation for Absolute Configuration Determination and Antibacterial Evaluation.
Front Chem 2022, 10:912396. PMID: 35711965. DOI: 10.3389/fchem.2022.912396.

Xing J., Pan J., Yi H., Lv K., Gan Q., Wang M., Ge H., Huang X., Huang F., Wang Y., Rochaix J.D. & Yang W.:
The plastid-encoded protein Orf2971 is required for protein translocation and chloroplast quality control.
Plant Cell 2022, koac180. PMID: 35708659. DOI: 10.1093/plcell/koac180.

Liu Z., Farkas P., Wang K., Kohli M.O. & Fitzpatrick T.B.:
B vitamin supply in plants and humans: the importance of vitamer homeostasis.
Plant J 2022, 111(3):662-682. PMID: 35673947. DOI: 10.1111/tpj.15859.

Chew Y.H., Seaton D.D., Mengin V., Flis A., Mugford S.T., George G.M., Moulin M., Hume A., Zeeman S.C., Fitzpatrick T.B., Smith A.M., Stitt M. & Millar A.J.:
The Arabidopsis Framework Model version 2 predicts the organism-level effects of circadian clock gene mis-regulation.
In Silico Plants 2022, diac010. DOI: 10.1093/insilicoplants/diac010.

Liu Z., Hartman S., van Veen H., Zhang H., Leeggangers H.A.C.F., Martopawiro S., Bosman F., de Deugd F., Su P., Hummel M., Rankenberg T., Hassall K.L., Bailey-Serres J., Theodoulou F.L., Voesenek L.A.C.J. & Sasidharan R.:
Ethylene augments root hypoxia tolerance via growth cessation and reactive oxygen species amelioration.
Plant Physiol 2022, kiac245. PMID: 35640551. DOI: 10.1093/plphys/kiac245.

Podolec R., Wagnon T.B., Leonardelli M., Johansson H. & Ulm R.:
Arabidopsis B-box transcription factors BBX20-22 promote UVR8 photoreceptor-mediated UV-B responses.
Plant J 2022, 111(2):422-439. PMID: 35555928. DOI: 10.1111/tpj.15806.

Rochaix J.D.:
Chloroplast protein import machinery and quality control.
FEBS J 2022, 289(22):6908-6918. PMID: 35472255. DOI: 10.1111/febs.16464.

Demarsy E.:
WRKY-ing in the light.
New Phytol 2022, 235(1):5-7. PMID: 35445751. DOI: 10.1111/nph.18147.

Mangel N., Fudge J.B., Gruissem W., Fitzpatrick T.B. & Vanderschuren H.:
Natural Variation in Vitamin B₁ and Vitamin B₆ Contents in Rice Germplasm.
Front Plant Sci 2022, 13:856880. PMID: 35444674. DOI: 10.3389/fpls.2022.856880.

Teulet A., Camuel A., Perret X. & Giraud E.:
The Versatile Roles of Type III Secretion Systems in Rhizobium-Legume Symbioses.
Annu Rev Microbiol 2022, 76:45-65. PMID: 35395168. DOI: 10.1146/annurev-micro-041020-032624.

Guan Z., Zhang Q., Zhang Z., Zuo J., Chen J., Liu R., Savarin J., Broger L., Cheng P., Wang Q., Pei K., Zhang D., Zou T., Yan J., Yin P., Hothorn M. & Liu Z.:
Mechanistic insights into the regulation of plant phosphate homeostasis by the rice SPX2 - PHR2 complex.
Nat Commun 2022, 13(1):1581. PMID: 35332155. DOI: 10.1038/s41467-022-29275-8.

De Bellis D., Kalmbach L., Marhavy P., Daraspe J., Geldner N. & Barberon M.:
Extracellular vesiculo-tubular structures associated with suberin deposition in plant cell walls.
Nat Commun 2022, 13(1):1489. PMID: 35304458. DOI: 10.1038/s41467-022-29110-0.

Chen W., Huang J., Chen S., Zhang L., Rochaix J.D., Peng L. & Xin Q.:
Stromal Protein Chloroplast Development and Biogenesis1 Is Essential for Chloroplast Development and Biogenesis in Arabidopsis thaliana.
Front Plant Sci 2022, 13:815859. PMID: 35222475. DOI: 10.3389/fpls.2022.815859.

Liu Z., Wang J., Zhou Y., Zhang Y., Qin A., Yu X., Zhao Z., Wu R., Guo C., Bawa G., Rochaix J.D. & Sun X.:
Identification of novel regulators required for early development of vein pattern in the cotyledons by single-cell RNA-sequencing.
Plant J 2022, 110(1):7-22. PMID: 35218590. DOI: 10.1111/tpj.15719.

Altensell J., Wartenberg R., Haferkamp I., Hassler S., Scherer V., Steensma P., Fitzpatrick T.B., Sharma A., Sandoval-Ibañez O., Pribil M., Lehmann M., Leister D., Kleine T. & Neuhaus H.E.:
Loss of a Pyridoxal-Phosphate Phosphatase Rescues Arabidopsis Lacking an Endoplasmic Reticulum ATP Carrier.
Plant Physiol 2022, kiac048. PMID: 35139220. DOI: 10.1093/plphys/kiac048.

Iwasaki M., Penfield S. & Lopez-Molina L.:
Parental and Environmental Control of Seed Dormancy in Arabidopsis thaliana.
Annu Rev Plant Biol 2022, 73:355-378. PMID: 35138879. DOI: 10.1146/annurev-arplant-102820-090750.

Ayatollahi Z., Kazanaviciute V., Shubchynskyy V., Kvederaviciute K., Schwanninger M., Rozhon W., Stumpe M., Mauch F., Bartels S., Ulm R., Balazadeh S., Mueller-Roeber B., Meskiene I. & Schweighofer A.:
Dual control of MAPK activities by AP2C1 and MKP1 MAPK phosphatases regulates defence responses in Arabidopsis.
J Exp Bot 2022, erac018. PMID: 35088853. DOI: 10.1093/jxb/erac018.

Colinas M. & Fitzpatrick T.B.:
Coenzymes and the primary and specialized metabolism interface.
Curr Opin Plant Biol 2022, 66:102170. PMID: 35063913. DOI: 10.1016/j.pbi.2021.102170.

Liu Y., Maniero R.A., Giehl R.F.H., Melzer M., Steensma P., Krouk G., Fitzpatrick T.B. & von Wirén N.:
PDX1.1-dependent biosynthesis of vitamin B₆ protects roots from ammonium-induced oxidative stress.
Mol Plant 2022, S1674-2052(22)00012-0. PMID: 35063660. DOI: 10.1016/j.molp.2022.01.012.

Wu R., Liu Z., Wang J., Guo C., Zhou Y., Bawa G., Rochaix J.D. & Sun X.:
COE2 Is Required for the Root Foraging Response to Nitrogen Limitation.
Int J Mol Sci 2022, 23(2):861. PMID: 35055047. DOI: 10.3390/ijms23020861.

Strobbe S., Verstraete J., Fitzpatrick T.B., Faustino M., Lourenço T.F., Oliveira M.M., Stove C. & Van Der Straeten D.:
A novel panel of yeast assays for the assessment of thiamin and its biosynthetic intermediates in plant tissues.
New Phytol 2022, 234(2):748-763. PMID: 35037254. DOI: 10.1111/nph.17974.

Yang H., Chen T., Wang M., Zhou J., Liebl W., Barja F. & Chen F.:
Molecular biology: Fantastic toolkits to improve knowledge and application of acetic acid bacteria.
Biotechnol Adv 2022, 107911. PMID: 35033586. DOI: 10.1016/j.biotechadv.2022.107911.

Patrulea V., Gan B.H., Perron K., Cai X., Abdel-Sayed P., Sublet E., Ducret V., Nerhot N.P., Applegate L.A., Borchard G., Reymond J.L. & Jordan O.:
Synergistic effects of antimicrobial peptide dendrimer-chitosan polymer conjugates against Pseudomonas aeruginosa.
Carbohydr Polym 2022, 280:119025. PMID: 35027127. DOI: 10.1016/j.carbpol.2021.119025.

Lembrechts J.J., [...], Theurillat J.P., [...], Lenoir J. (total 406 authors):
Global maps of soil temperature.
Glob Chang Biol 2022, 28(9):3110-3144. PMID: 34967074. DOI: 10.1111/gcb.16060.

2021

Gautier L., Randriarisoa A., Boluda G.C., Christe C., Cornelisse K. & Naciri Y.:
Case study 3 : Conservation assessments in Malagasy Sapotaceae.
In: The Red List of Trees of Madagascar 2021, 18-19. Botanic Gardens Conservation International. Link.

Kuschmierz P., Beniermann A., Bergmann A., Pinxten R., Aivelo T., Berniak-Woźny J., Bohlin G., Bugallo-Rodriguez A., Cardia P., Cavadas B.F.B.P., Cebesoy U.B., Cvetković D.D., Demarsy E., Đorđević M.S., Drobniak S.M., Dubchak L., Dvořáková R.M., Fančovičová J., Fortin C., Futo M., Geamănă N.A., Gericke N., Grasso D.A., Lendvai Á.Z., Mavrikaki E., Meneganzin A., Mogias A., Möller A., Mota P.G., Naciri Y., Németh Z., Ożańska-Ponikwia K., Paolucci S., Pap P.L., Petersson M., Pietrzak B., Pievani T., Pobric A., Porozovs J., Realdon G., Sá-Pinto X., Savković U.B., Sicard M., Sofonea M.T., Sorgo A., Stermin A.N., Tăușan I., Torkar G., Türkmen L., Tutnjević S., Uitto A.E., Varga M., Varga M., Vazquez-Ben L., Venetis C., Viguera E., Virtbauer L.C., Vutsova A., Yruela I., Zandveld J. & Graf D.:
European first-year university students accept evolution but lack substantial knowledge about it: a standardized European cross-country assessment.
Evo Edu Outreach 2021, 14:17. DOI: 10.1186/s12052-021-00158-8.

Clerc P. & Naciri Y.:
Usnea dasopoga (Ach.) Nyl. and U. barbata (L.) F. H. Wigg. (Ascomycetes, Parmeliaceae) are two different species: a plea for reliable identifications in molecular studies.
The Lichenologist 2021, 53(3):221–230. DOI: 10.1017/S0024282921000128.

Gupta K.J., Chandra Kaladhar V., Fitzpatrick T.B., Fernie A.R., Møller I.M. & Loake G.J.:
Nitric oxide regulation of plant metabolism.
Mol Plant 2021, S1674-2052(21)00482-2. PMID: 34971792.

Zhang P., Peng H., Llauro C., Bucher E. & Mirouze M.:
ecc_finder: A Robust and Accurate Tool for Detecting Extrachromosomal Circular DNA From Sequencing Data.
Front Plant Sci 2021, 12:743742. PMID: 34925397.

Staude I.R., Pereira H.M., Daskalova G.N., Bernhardt-Römermann M., Diekmann M., Pauli H., Van Calster H., Vellend M., Bjorkman A.D., Brunet J., De Frenne P., Hédl R., Jandt U., Lenoir J., Myers-Smith I.H., Verheyen K., Wipf S., Wulf M., Andrews C., Barančok P., Barni E., Benito-Alonso J.L., Bennie J., Berki I., Blüml V., Chudomelová M., Decocq G., Dick J., Dirnböck T., Durak T., Eriksson O., Erschbamer B., Graae B.J., Heinken T., Schei F.H., Jaroszewicz B., Kopecký M., Kudernatsch T., Macek M., Malicki M., Máliš F., Michelsen O., Naaf T., Nagel T.A., Newton A.C., Nicklas L., Oddi L., Ortmann-Ajkai A., Palaj A., Petraglia A., Petřík P., Pielech R., Porro F., Puşcaş M., Reczyńska K., Rixen C., Schmidt W., Standovár T., Steinbauer K., Świerkosz K., Teleki B., Theurillat J.P., Turtureanu P.D., Ursu T.M., Vanneste T., Vergeer P., Vild O., Villar L., Vittoz P., Winkler M. & Baeten L.:
Directional turnover towards larger-ranged plants over time and across habitats.
Ecol Lett 2021, 25(2):466-482. PMID: 34866301.

Shukla V. & Barberon M.:
Building and breaking of a barrier: Suberin plasticity and function in the endodermis.
Curr Opin Plant Biol 2021, 64:102153. PMID: 34861611.

Alfattani A., Marcourt L., Hofstetter V., Queiroz E.F., Leoni S., Allard P.M., Gindro K., Stien D., Perron K. & Wolfender J.L.:
Combination of Pseudo-LC-NMR and HRMS/MS-Based Molecular Networking for the Rapid Identification of Antimicrobial Metabolites From Fusarium petroliphilum.
Front Mol Biosci 2021, 8:725691. PMID: 34746230.

Ramakrishna P.:
Chalky pH and Fe deficiency? IRONMAN to the rescue.
Plant Physiol 2021, 187(3):1281-1283. PMID: 34734282.

Gorelova V., Colinas M., Dell'Aglio E., Flis P., Salt D.E. & Fitzpatrick T.B.:
Phosphorylated B6 vitamer deficiency in SALT OVERLY SENSITIVE4 mutants compromises shoot and root development.
Plant Physiol 2021, 188(1):220-240. PMID: 34730814.

De Giorgi J., Fuchs C., Iwasaki M., Kim W., Piskurewicz U., Gully K., Utz-Pugin A., Mène-Saffrané L., Waridel P., Nawrath C., Longoni F.P., Fujita S., Loubéry S. & Lopez-Molina L.:
The Arabidopsis mature endosperm promotes seedling cuticle formation via release of sulfated peptides.
Dev Cell 2021, 56(22):3066-3081.e5. PMID: 34706263.

Ducret V., Abdou M., Goncalves Milho C., Leoni S., Martin-Pelaud O., Sandoz A., Segovia Campos I., Tercier-Waeber M.L., Valentini M. & Perron K.:
Global Analysis of the Zinc Homeostasis Network in Pseudomonas aeruginosa and Its Gene Expression Dynamics.
Front Microbiol 2021, 12:739988. PMID: 34690984.

Pellissier L., Leoni S., Marcourt L., Ferreira Queiroz E., Lecoultre N., Quiros-Guerrero L.M., Barthélémy M., Eparvier V., Chave J., Stien D., Gindro K., Perron K. & Wolfender J.L.:
Characterization of Pseudomonas aeruginosa Quorum Sensing Inhibitors from the Endophyte Lasiodiplodia venezuelensis and Evaluation of Their Antivirulence Effects by Metabolomics.
Microorganisms 2021, 9(9):1807. PMID: 34576706.

Shukla V., Han J.P., Cléard F., Lefebvre-Legendre L., Gully K., Flis P., Berhin A., Andersen T.G., Salt D.E., Nawrath C. & Barberon M.:
Suberin plasticity to developmental and exogenous cues is regulated by a set of MYB transcription factors.
Proc Natl Acad Sci U S A 2021, 118(39):e2101730118. PMID: 34551972.

Couto D., Richter A., Walter H., Furkert D., Hothorn M. & Fiedler D.:
Using Biotinylated myo-Inositol Hexakisphosphate to Investigate Inositol Pyrophosphate-Protein Interactions with Surface-Based Biosensors.
Biochemistry 2021, 60(37):2739-2748. PMID: 34499474.

Pellissier L., Koval A., Marcourt L., Ferreira Queiroz E., Lecoultre N., Leoni S., Quiros-Guerrero L.M., Barthélémy M., Duivelshof B.L., Guillarme D., Tardy S., Eparvier V., Perron K., Chave J., Stien D., Gindro K., Katanaev V. & Wolfender J.L.:
Isolation and Identification of Isocoumarin Derivatives With Specific Inhibitory Activity Against Wnt Pathway and Metabolome Characterization of Lasiodiplodia venezuelensis.
Front Chem 2021, 9:664489. PMID: 34458231.

Boluda C.G., Christe C., Randriarisoa A., Gautier L. & Naciri Y.:
Species Delimitation and Conservation in Taxonomically Challenging Lineages: The Case of Two Clades of Capurodendron (Sapotaceae) in Madagascar.
Plants (Basel) 2021, 10(8):1702. PMID: 34451747.

Barja F.:
Bacterial nanocellulose production and biomedical applications.
J Biomed Res 2021, 35(4):310-317. PMID: 34253695.

Boluda C.G., Rico V.J., Naciri Y., Hawksworth D.L. & Scheidegger C.:
Phylogeographic reconstructions can be biased by ancestral shared alleles: The case of the polymorphic lichen Bryoria fuscescens in Europe and North Africa.
Mol Ecol 2021, 30(19):4845-4865. PMID: 34252241.

Rochaix J.D., Surzycki R. & Ramundo S.:
Regulated Chloroplast Gene Expression in Chlamydomonas.
Methods Mol Biol 2021, 2317:305-318. PMID: 34028778.

Iwasaki M. & Lopez-Molina L.:
Arabidopsis thaliana Mature Endosperm Dissection and Isolation of Genomic DNA from Mature Seed Tissues.
Methods Mol Biol 2021, 2250:239-243. PMID: 33900609.

Zhang J., Bai Z., Ouyang M., Xu X., Xiong H., Wang Q., Grimm B., Rochaix J.D. & Zhang L.:
The DnaJ proteins DJA6 and DJA5 are essential for chloroplast iron-sulfur cluster biogenesis.
EMBO J 2021, e106742. PMID: 33855718.

Ramakrishna P.:
Formins bridle and unleash their way through cytokinesis: a phragmoplast-centered view.
Plant Physiol 2021, 186(2):829-831. PMID: 33842968.

Buetti-Dinh A., Ruinelli M., Czerski D., Scapozza C., Martignier A., Roman S., Caminada A. & Tonolla M.:
Geochemical and metagenomics study of a metal-rich, green-turquoise-coloured stream in the southern Swiss Alps.
PLoS One 2021, 16(3):e0248877. PMID: 33784327.

Longoni F.P. & Goldschmidt-Clermont M.:
Thylakoid Protein Phosphorylation in Chloroplasts.
Plant Cell Physiol 2021, 62(7):1094-1107. PMID: 33768241.

Parys K., Colaianni N.R., Lee H.S., Hohmann U., Edelbacher N., Trgovcevic A., Blahovska Z., Lee D., Mechtler A., Muhari-Portik Z., Madalinski M., Schandry N., Rodríguez-Arévalo I., Becker C., Sonnleitner E., Korte A., Bläsi U., Geldner N., Hothorn M., Jones C.D., Dangl J.L. & Belkhadir Y.:
Signatures of antagonistic pleiotropy in a bacterial flagellin epitope.
Cell Host Microbe 2021, 29(4):620-634.e9. PMID: 33713601.

Podolec R., Demarsy E. & Ulm R.:
Perception and Signaling of Ultraviolet-B Radiation in Plants.
Annu Rev Plant Biol 2021, 72:793-822. PMID: 33636992.

Pipitone R., Eicke S., Pfister B., Glauser G., Falconet D., Uwizeye C., Pralon T., Zeeman S.C., Kessler F. & Demarsy E.:
A multifaceted analysis reveals two distinct phases of chloroplast biogenesis during de-etiolation in Arabidopsis.
Elife 2021, 10. PMID: 33629953.

Wu J., Rong L., Lin W., Kong L., Wei D., Zhang L., Rochaix J.D. & Xu X.:
Functional redox links between lumen thiol oxidoreductase1 and serine/threonine-protein kinase STN7.
Plant Physiol 2021, 186(2):964-976. PMID: 33620491.

Christe C., Boluda C.G., Koubínová D., Gautier L. & Naciri Y.:
New genetic markers for Sapotaceae phylogenomics: more than 600 nuclear genes applicable from family to population levels.
Mol Phylogenet Evol 2021, 107123. PMID: 33610647.

Cutini M., Flavio M., Giuliana B., Guido R. & Jean-Paul T.:
Bioclimatic pattern in a Mediterranean mountain area: assessment from a classification approach on a regional scale.
Int J Biometeorol 2021, 65(7):1085-1097. PMID: 33585979.

Podolec R., Lau K., Wagnon T.B., Hothorn M. & Ulm R.:
A constitutively monomeric UVR8 photoreceptor confers enhanced UV-B photomorphogenesis.
Proc Natl Acad Sci U S A 2021, 118(6):e2017284118. PMID: 33542100.

Di Nezio F., Beney C., Roman S., Danza F., Buetti-Dinh A., Tonolla M. & Storelli N.:
Anoxygenic photo- and chemo-synthesis of phototrophic sulfur bacteria from an alpine meromictic lake.
FEMS Microbiol Ecol 2021, 97(3):fiab010. PMID: 33512460.

Ried M.K., Wild R., Zhu J., Pipercevic J., Sturm K., Broger L., Harmel R.K., Abriata L.A., Hothorn L.A., Fiedler D., Hiller S. & Hothorn M.:
Inositol pyrophosphates promote the interaction of SPX domains with the coiled-coil motif of PHR transcription factors to regulate plant phosphate homeostasis.
Nat Commun 2021, 12(1):384. PMID: 33452263.

Ogutcen E., Christe C., Nishii K., Salamin N., Möller M. & Perret M.:
Phylogenomics of Gesneriaceae using targeted capture of nuclear genes.
Mol Phylogenet Evol 2021, 107068. PMID: 33422648.

Fitzpatrick T.B. & Noordally Z.:
Of clocks and coenzymes in plants: intimately connected cycles guiding central metabolism?.
New Phytol 2021, 230(2):416-432. PMID: 33264424.

Robe K., Conejero G., Gao F., Lefebvre-Legendre L., Sylvestre-Gonon E., Rofidal V., Hem S., Rouhier N., Barberon M., Hecker A., Gaymard F., Izquierdo E. & Dubos C.:
Coumarin accumulation and trafficking in Arabidopsis thaliana: a complex and dynamic process.
New Phytol 2021, 229(4):2062-2079. PMID: 33205512.

2020

Ogutcen E., Durand K., Wolowski M., Clavijo L., Graham C., Glauser G. & Perret M.:
Chemical Basis of Floral Color Signals in Gesneriaceae: The Effect of Alternative Anthocyanin Pathways.
Front Plant Sci 2020, 11:604389. PMID: 33381138.

Crook A.D., Willoughby A.C., Hazak O., Okuda S., VanDerMolen K.R., Soyars C.L., Cattaneo P., Clark N.M., Sozzani R., Hothorn M., Hardtke C.S. & Nimchuk Z.L.:
BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in Arabidopsis roots.
Proc Natl Acad Sci U S A 2020, 117(51):32750-32756. PMID: 33288706.

Ramundo S., Asakura Y., Salomé P.A., Strenkert D., Boone M., Mackinder L.C.M., Takafuji K., Dinc E., Rahire M., Crèvecoeur M., Magneschi L., Schaad O., Hippler M., Jonikas M.C., Merchant S., Nakai M., Rochaix J.D. & Walter P.:
Coexpressed subunits of dual genetic origin define a conserved supercomplex mediating essential protein import into chloroplasts.
Proc Natl Acad Sci U S A 2020, 117(51):32739-32749. PMID: 33273113.

Paulišić S., Qin W., Arora Verasztó H., Then C., Alary B., Nogue F., Tsiantis M., Hothorn M. & Martínez-García J.F.:
Adjustment of the PIF7-HFR1 transcriptional module activity controls plant shade adaptation.
EMBO J 2021, 40(1):e104273. PMID: 33264441.

Steinbrenner A.D., Muñoz-Amatriaín M., Chaparro A.F., Aguilar-Venegas J.M., Lo S., Okuda S., Glauser G., Dongiovanni J., Shi D., Hall M., Crubaugh D., Holton N., Zipfel C., Abagyan R., Turlings T.C.J., Close T.J., Huffaker A. & Schmelz E.A.:
A receptor-like protein mediates plant immune responses to herbivore-associated molecular patterns.
Proc Natl Acad Sci U S A 2020, 117(49):31510-31518. PMID: 33229576.

Duan Z., Li K., Zhang L., Che L., Lu L., Rochaix J.D., Lu C. & Peng L.:
F-Type ATP Synthase Assembly Factors Atp11 and Atp12 in Arabidopsis.
Front Plant Sci 2020, 11:522753. PMID: 33193469.

Martignier A., De Respinis S., Filella M., Segovia-Campos I., Marin B., Günther G., Barja F., Tonolla M., Jaquet J.M., Melkonian M. & Ariztegui D.:
Biomineralization Capacities of Chlorodendrophyceae: Correlation Between Chloroplast Morphology and the Distribution of Micropearls in the Cell.
Protist 2020, 171(5):125760. PMID: 33126021.

Demonsais L., Utz-Pugin A., Loubéry S. & Lopez-Molina L.:
Identification of tannic cell walls at the outer surface of the endosperm upon Arabidopsis seed coat rupture.
Plant J 2020, 104(3):567-580. PMID: 32985026.

Hofmann M., Loubéry S. & Fitzpatrick T.B.:
On the nature of thiamine triphosphate in Arabidopsis.
Plant Direct 2020, 4(8):e00258. PMID: 32885135.

Hohmann U., Ramakrishna P., Wang K., Lorenzo-Orts L., Nicolet J., Henschen A., Barberon M., Bayer M. & Hothorn M.:
Constitutive Activation of Leucine-Rich Repeat Receptor Kinase Signaling Pathways by BAK1-INTERACTING RECEPTOR-LIKE KINASE3 Chimera.
Plant Cell 2020, 32(10):3311-3323. PMID: 32796127.

Righi D., Huber R., Koval A., Marcourt L., Schnee S., Le Floch A., Ducret V., Perozzo R., de Ruvo C.C., Lecoultre N., Michellod E., Ebrahimi S.N., Rivara-Minten E., Katanaev V.L., Perron K., Wolfender J.L., Gindro K. & Queiroz E.F.:
Generation of Stilbene Antimicrobials against Multiresistant Strains of Staphylococcus aureus through Biotransformation by the Enzymatic Secretome of Botrytis cinerea.
J Nat Prod 2020, 83(8):2347-2356. PMID: 32705864.

Bursch K., Toledo-Ortiz G., Pireyre M., Lohr M., Braatz C. & Johansson H.:
Identification of BBX proteins as rate-limiting cofactors of HY5.
Nat Plants 2020, 6(8):921-928. PMID: 32661279.

Benedetti M., Barera S., Longoni P., Guardini Z., Herrero Garcia N., Bolzonella D., Lopez-Arredondo D., Herrera-Estrella L., Goldschmidt-Clermont M., Bassi R. & Dall'Osto L.:
A microalgal-based preparation with synergistic cellulolytic and detoxifying action towards chemical-treated lignocellulose.
Plant Biotechnol J 2020. PMID: 32649019.

Liu Z., Zhou Y., Guo J., Li J., Tian Z., Zhu Z., Wang J., Wu R., Zhang B., Hu Y., Sun Y., Shangguan Y., Li W., Li T., Hu Y., Guo C., Rochaix J.D., Miao Y. & Sun X.:
Global Dynamic Molecular Profiling of Stomatal Lineage Cell Development by Single-Cell RNA Sequencing.
Mol Plant 2020, 13(8):1178-1193. PMID: 32592820.

Fitzpatrick T.B. & Chapman L.M.:
The importance of thiamine (vitamin B₁) in plant health: From crop yield to biofortification.
J Biol Chem 2020, 295(34):12002-12013. PMID: 32554808.

Buijs G.:
A Perspective on Secondary Seed Dormancy in Arabidopsis thaliana.
Plants (Basel) 2020, 9(6):E749. PMID: 32549219.

Ducret V., Gonzalez M.R., Leoni S., Valentini M. & Perron K.:
The CzcCBA Efflux System Requires the CadA P-Type ATPase for Timely Expression Upon Zinc Excess in Pseudomonas aeruginosa.
Front Microbiol 2020, 11:911. PMID: 32477311.

Sun Y., Liu Z., Guo J., Zhu Z., Zhou Y., Guo C., Hu Y., Li J., Shangguan Y., Li T., Hu Y., Wu R., Li W., Rochaix J.D., Miao Y. & Sun X.:
WRKY33-PIF4 loop is required for the regulation of H₂O₂ homeostasis.
Biochem Biophys Res Commun 2020, 527(4):922-928. PMID: 32423827.

Unay J. & Perret X.:
A Minimal Genetic Passkey to Unlock Many Legume Doors to Root Nodulation by Rhizobia.
Genes (Basel) 2020, 11(5):E521. PMID: 32392829.

Tavridou E., Schmid-Siegert E., Fankhauser C. & Ulm R.:
UVR8-mediated inhibition of shade avoidance involves HFR1 stabilization in Arabidopsis.
PLoS Genet 2020, 16(5):e1008797. PMID: 32392219.

Noordally Z.B., Trichtinger C., Dalvit I., Hofmann M., Roux C., Zamboni N., Pourcel L., Gas-Pascual E., Gisler A. & Fitzpatrick T.B.:
The coenzyme thiamine diphosphate displays a daily rhythm in the Arabidopsis nucleus.
Commun Biol 2020, 3(1):209. PMID: 32372067.

Helmstetter A.J., Kamga S.M., Bethune K., Lautenschläger T., Zizka A., Bacon C.D., Wieringa J.J., Stauffer F., Antonelli A., Sonké B. & Couvreur T.L.P.:
Unraveling the Phylogenomic Relationships of the Most Diverse African Palm Genus Raphia (Calamoideae, Arecaceae).
Plants (Basel) 2020, 9(4):E549. PMID: 32340211.

Cariti F., Chazaux M., Lefebvre-Legendre L., Longoni P., Ghysels B., Johnson X. & Goldschmidt-Clermont M.:
Regulation of Light Harvesting in Chlamydomonas reinhardtii Two Protein Phosphatases Are Involved in State Transitions.
Plant Physiol 2020, 183(4):1749-1764. PMID: 32327546.

Naciri Y. & Linder H.P.:
The genetics of evolutionary radiations.
Biol Rev Camb Philos Soc 2020, 95(4):1055-1072. PMID: 32233014.

Tissot N. & Ulm R.:
Cryptochrome-mediated blue-light signalling modulates UVR8 photoreceptor activity and contributes to UV-B tolerance in Arabidopsis.
Nat Commun 2020, 11(1):1323. PMID: 32165634.

Fossou R.K., Pothier J.F., Zézé A. & Perret X.:
Bradyrhizobium ivorense sp. nov. as a potential local bioinoculant for Cajanus cajan cultures in Côte d'Ivoire.
Int J Syst Evol Microbiol 2020, 70(2):1421-1430. PMID: 32122457.

Sela A., Piskurewicz U., Megies C., Mène-Saffrané L., Finazzi G. & Lopez-Molina L.:
Embryonic Photosynthesis Affects Post-Germination Plant Growth.
Plant Physiol 2020, 182(4):2166-2181. PMID: 32060052.

Hausmann S., Geiser J., Vadas O., Ducret V., Perron K. & Valentini M.:
Auxiliary domains of the HrpB bacterial DExH-box helicase shape its RNA preferences.
RNA Biol 2020:1-14. PMID: 32050838.

Doll N.M., Royek S., Fujita S., Okuda S., Chamot S., Stintzi A., Widiez T., Hothorn M., Schaller A., Geldner N. & Ingram G.:
A two-way molecular dialogue between embryo and endosperm is required for seed development.
Science 2020, 367(6476):431-435. PMID: 31974252.

Okuda S., Fujita S., Moretti A., Hohmann U., Doblas V.G., Ma Y., Pfister A., Brandt B., Geldner N. & Hothorn M.:
Molecular mechanism for the recognition of sequence-divergent CIF peptides by the plant receptor kinases GSO1/SGN3 and GSO2.
Proc Natl Acad Sci U S A 2020, 117(5):2693-2703. PMID: 31964818.

Zhu J., Loubéry S., Broger L., Zhang Y., Lorenzo-Orts L., Utz-Pugin A., Fernie A.R., Young-Tae C. & Hothorn M.:
A genetically validated approach for detecting inorganic polyphosphates in plants.
Plant J 2020, 102(3):507-516. PMID: 31816134.

Xiong H.B., Wang J., Huang C., Rochaix J.D., Lin F.M., Zhang J.X., Ye L.S., Shi X.H., Yu Q.B. & Yang Z.N.:
mTERF8, a Member of the Mitochondrial Transcription Termination Factor Family, Is Involved in the Transcription Termination of Chloroplast Gene psbJ.
Plant Physiol 2020, 182(1):408-423. PMID: 31685645.

Guo J., Zhou Y., Li J., Sun Y., Shangguan Y., Zhu Z., Hu Y., Li T., Hu Y., Rochaix J.D., Miao Y. & Sun X.:
COE 1 and GUN1 regulate the adaptation of plants to high light stress.
Biochem Biophys Res Commun 2020, 521(1):184-189. PMID: 31630799.

Tavridou E., Pireyre M. & Ulm R.:
Degradation of the transcription factors PIF4 and PIF5 under UV-B promotes UVR8-mediated inhibition of hypocotyl growth in Arabidopsis.
Plant J 2020, 101(3):507-517. PMID: 31571300.

Lorenzo-Orts L., Couto D. & Hothorn M.:
Identity and functions of inorganic and inositol polyphosphates in plants.
New Phytol 2020, 225(2):637-652. PMID: 31423587.

 

2019

Vaattovaara A., Brandt B., Rajaraman S., Safronov O., Veidenberg A., Luklová M., Kangasjärvi J., Löytynoja A., Hothorn M., Salojärvi J. & Wrzaczek M.:
Mechanistic insights into the evolution of DUF26-containing proteins in land plants.
Commun Biol 2019, 2(1):56. PMID: 31924924.

Dell'Aglio E., Giustini C., Kraut A., Couté Y., Costa A., Decros G., Gibon Y., Mazars C., Matringe M., Finazzi G. & Curien G.:
Identification of the Arabidopsis Calmodulin-Dependent NAD+ Kinase That Sustains the Elicitor-Induced Oxidative Burst.
Plant Physiol 2019, 181(4):1449-1458. PMID: 31554701.

Rochaix J.D.:
Dynamic Modeling of a 100-Million-Atom Organelle at the Source of Life.
Cell 2019, 179(5):1012-1014. PMID: 31730846.

Dell'Aglio E., Dalvit I., Loubéry S. & Fitzpatrick T.B.:
Clarification of the dispensability of PDX1.2 for Arabidopsis viability using CRISPR/Cas9.
BMC Plant Biol 2019, 19(1):464. PMID: 31684863.

Brackmann M., Leib S.L., Tonolla M., Schürch N. & Wittwer M.:
Antimicrobial resistance Classification using MALDI-TOF-MS is not that easy: Lessons from vancomycin-resistant Enterococcus faecium.
Clin Microbiol Infect 2019. PMID: 31682986.

Longoni P., Samol I. & Goldschmidt-Clermont M.:
The Kinase STATE TRANSITION 8 Phosphorylates Light Harvesting Complex II and Contributes to Light Acclimation in Arabidopsis thaliana.
Front Plant Sci 2019, 10:1156. PMID: 31608094.

Zhu J., Lau K., Puschmann R., Harmel R.K., Zhang Y., Pries V., Gaugler P., Broger L., Dutta A.K., Jessen H.J., Schaaf G., Fernie A.R., Hothorn L.A., Fiedler D. & Hothorn M.:

Two bifunctional inositol pyrophosphate kinases/phosphatases control plant phosphate homeostasis.
Elife 2019, 8. PMID: 31436531.

Loiseau O., Olivares I., Paris M., de La Harpe M., Weigand A., Koubínová D., Rolland J., Bacon C.D., Balslev H., Borchsenius F., Cano A., Couvreur T.L.P., Delnatte C., Fardin F., Gayot M., Mejía F., Mota-Machado T., Perret M., Roncal J., Sanin M.J., Stauffer F., Lexer C., Kessler M. & Salamin N.:
Targeted Capture of Hundreds of Nuclear Genes Unravels Phylogenetic Relationships of the Diverse Neotropical Palm Tribe Geonomateae.
Front Plant Sci 2019, 10:864. PMID: 31396244.

Kim W., Zeljković SĆ, Piskurewicz U., Megies C., Tarkowski P. & Lopez-Molina L.:
polyamine uptake transporter 2 (put2) and decaying seeds enhance phyA-mediated germination by overcoming PIF1 repression of germination.
PLoS Genet 2019, 15(7):e1008292. PMID: 31339933.

Ramakrishna P. & Barberon M.:
Polarized transport across root epithelia.
Curr Opin Plant Biol 2019, 52:23-29. PMID: 31323542.

Lespinats S., De Clerck O., Colange B., Gorelova V., Grando D., Maréchal E., Van Der Straeten D., Rébeillé F. & Bastien O.:
Phylogeny and Sequence Space: A Combined Approach to Analyze the Evolutionary Trajectories of Homologous Proteins. The Case Study of Aminodeoxychorismate Synthase.
Acta Biotheor 2019. PMID: 31312977.

Lau K., Podolec R., Chappuis R., Ulm R. & Hothorn M.:
Plant photoreceptors and their signaling components compete for COP1 binding via VP peptide motifs.
EMBO J 2019, e102140. PMID: 31304983.

Unay J. & Perret X.:
Synthetic Plasmids to Challenge Symbiotic Nitrogen Fixation Between Rhizobia and Legumes.
In: Methods in Rhizosphere Biology Research 2019, 3-18. Rhizosphere Biology. Reinhardt D., Sharma A. (eds) Springer, Singapore. DOI: 10.1007/978-981-13-5767-1_1.

Adamczyk M., Hagedorn F., Wipf S., Donhauser J., Vittoz P., Rixen C., Frossard A., Theurillat J.P. & Frey B.:
The Soil Microbiome of GLORIA Mountain Summits in the Swiss Alps.
Front Microbiol 2019, 10:1080. PMID: 31156590.

Lorenzo-Orts L., Hohmann U., Zhu J. & Hothorn M.:
Molecular characterization of CHAD domains as inorganic polyphosphate-binding modules.
Life Sci Alliance 2019, 2(3):e201900385. PMID: 31133615.

Mangel N., Fudge J.B., Li K.T., Wu T.Y., Tohge T., Fernie A.R., Szurek B., Fitzpatrick T.B., Gruissem W. & Vanderschuren H.:
Enhancement of vitamin B6 levels in rice expressing Arabidopsis vitamin B6 biosynthesis de novo genes.
Plant J 2019, 99(6):1047-1065. PMID: 31063672.

Hohmann U. & Hothorn M.:
Crystal structure of the leucine-rich repeat ectodomain of the plant immune receptor kinase SOBIR1.
Acta Crystallogr D Struct Biol 2019, 75(Pt 5):488-497. PMID: 31063151.

Zhang L., Zhou W., Che L., Rochaix J.D., Lu C., Li W. & Peng L.:
PPR Protein BFA2 Is Essential for the Accumulation of the atpH/F Transcript in Chloroplasts.
Front Plant Sci 2019, 10:446. PMID: 31031784.

Robinson G.C., Kaufmann M., Roux C., Martinez-Font J., Hothorn M., Thore S. & Fitzpatrick T.B.:
Crystal structure of the pseudoenzyme PDX1.2 in complex with its cognate enzyme PDX1.3: a total eclipse.
Acta Crystallogr D Struct Biol 2019, 75(Pt 4):400-415. PMID: 30988257.

Iwasaki M., Hyvärinen L., Piskurewicz U. & Lopez-Molina L.:
Non-canonical RNA-directed DNA methylation participates in maternal and environmental control of seed dormancy.
Elife 2019, 8. PMID: 30910007.

Luedin S.M., Storelli N., Danza F., Roman S., Wittwer M., Pothier J.F. & Tonolla M.:
Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium "Thiodictyon syntrophicum".
Front Microbiol 2019, 10:384. PMID: 30891015.

Wang P., Calvo-Polanco M., Reyt G., Barberon M., Champeyroux C., Santoni V., Maurel C., Franke R.B., Ljung K., Novak O., Geldner N., Boursiac Y. & Salt D.E.:
Surveillance of cell wall diffusion barrier integrity modulates water and solute transport in plants.
Sci Rep 2019, 9(1):4227. PMID: 30862916.

Rosado-Souza L., Proost S., Moulin M., Bergmann S., Bocobza S., Aharoni A., Fitzpatrick T.B., Mutwil M., Fernie A.R. & Obata T.:
Appropriate thiamin pyrophosphate levels are required for acclimation to changes in photoperiod.
Plant Physiol 2019, 180(1):185-197. PMID: 30837347.

Cherni A.E. & Perret X.:
Deletion of rRNA Operons of Sinorhizobium fredii Strain NGR234 and Impact on Symbiosis With Legumes.
Front Microbiol 2019, 10:154. PMID: 30814981.

Vaattovaara A., Brandt B., Rajaraman S., Safronov O., Veidenberg A., Luklová M., Kangasjärvi J., Löytynoja A., Hothorn M., Salojärvi J. & Wrzaczek M.:
Mechanistic insights into the evolution of DUF26-containing proteins in land plants.
Commun Biol 2019, 2:56. PMID: 30775457.

Naciri Y., Christe C., Bétrisey S., Song Y.G., Deng M., Garfì G. & Kozlowski G.:
Species delimitation in the East Asian species of the relict tree genus Zelkova (Ulmaceae): A complex history of diversification and admixture among species.
Mol Phylogenet Evol 2019, 134:172-185. PMID: 30769098.

Champeyroux C., Bellati J., Barberon M., Rofidal V., Maurel C. & Santoni V.:
Regulation of a plant aquaporin by a Casparian strip membrane domain protein-like.
Plant Cell Environ 2019. PMID: 30767240.

Rochaix J.D. & Bassi R.:
LHC-like proteins involved in stress responses and biogenesis/repair of the photosynthetic apparatus.
Biochem J 2019, 476(3):581-593. PMID: 30765616.

Luedin S.M., Liechti N., Cox R.P., Danza F., Frigaard N.U., Posth N.R., Pothier J.F., Roman S., Storelli N., Wittwer M. & Tonolla M.:
Draft Genome Sequence of Chromatium okenii Isolated from the Stratified Alpine Lake Cadagno.
Sci Rep 2019, 9(1):1936. PMID: 30760771.

Lorenzo-Orts L., Witthoeft J., Deforges J., Martinez J., Loubéry S., Placzek A., Poirier Y., Hothorn L.A., Jaillais Y. & Hothorn M.:
Concerted expression of a cell cycle regulator and a metabolic enzyme from a bicistronic transcript in plants.
Nat Plants 2019, 5(2):184-193. PMID: 30737513.

Berg J.S., Pjevac P., Sommer T., Buckner C.R.T., Philippi M., Hach P.F., Liebeke M., Holtappels M., Danza F., Tonolla M., Sengupta A., Schubert C.J., Milucka J. & Kuypers M.M.M.:
Dark aerobic sulfide oxidation by anoxygenic phototrophs in anoxic waters.
Environ Microbiol 2019. PMID: 30689286.

Cornut J., De Respinis S., Tonolla M., Petrini O., Bärlocher F., Chauvet E. & Bruder A.:
Rapid characterization of aquatic hyphomycetes by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.
Mycologia 2019, 111(1):177-189. PMID: 30640580.

Righi D., Marcourt L., Koval A., Ducret V., Pellissier L., Mainetti A., Katanaev V.L., Perron K., Wolfender J.L. & Queiroz E.F.:
Chemo-Diversification of Plant Extracts Using a Generic Bromination Reaction and Monitoring by Metabolite Profiling.
ACS Comb Sci 2019, 21(3):171-182. PMID: 30607939.

MacGregor D.R., Zhang N., Iwasaki M., Chen M., Dave A., Lopez-Molina L. & Penfield S.:
ICE1 and ZOU determine the depth of primary seed dormancy in Arabidopsis independently of their role in endosperm development.
Plant J 2019, 98(2):277-290. PMID: 30570804.

Li Y., Liu B., Zhang J., Kong F., Zhang L., Meng H., Li W., Rochaix J.D., Li D. & Peng L.:
OHP1, OHP2, and HCF244 Form a Transient Functional Complex with the Photosystem II Reaction Center.
Plant Physiol 2019, 179(1):195-208. PMID: 30397023.

 

2018

Danza F., Ravasi D., Storelli N., Roman S., Lüdin S., Bueche M. & Tonolla M.:
Bacterial diversity in the water column of meromictic Lake Cadagno and evidence for seasonal dynamics.
PLoS One 2018, 13(12):e0209743. PMID: 30586464.

Temprano-Vera F., Rodríguez-Navarro D.N., Acosta-Jurado S., Perret X., Fossou R.K., Navarro-Gómez P., Zhen T., Yu D., An Q., Buendía-Clavería A.M., Moreno J., López-Baena F.J., Ruiz-Sainz J.E. & Vinardell J.M.:
Sinorhizobium fredii Strains HH103 and NGR234 Form Nitrogen Fixing Nodules With Diverse Wild Soybeans (Glycine soja) From Central China but Are Ineffective on Northern China Accessions.
Front Microbiol 2018, 9:2843. PMID: 30519234.

Arongaus A.B., Chen S., Pireyre M., Glöckner N., Galvão V.C., Albert A., Winkler J.B., Fankhauser C., Harter K. & Ulm R.:
Arabidopsis RUP2 represses UVR8-mediated flowering in noninductive photoperiods.
Genes Dev 2018, 32(19-20):1332-1343. PMID: 30254107.

Perraki A., DeFalco T.A., Derbyshire P., Avila J., Séré D., Sklenar J., Qi X., Stransfeld L., Schwessinger B., Kadota Y., Macho A.P., Jiang S., Couto D., Torii K.U., Menke F.L.H. & Zipfel C.:
Phosphocode-dependent functional dichotomy of a common co-receptor in plant signalling.
Nature 2018, 561(7722):248-252. PMID: 30177827.

Chahtane H., Nogueira Füller T., Allard P.M., Marcourt L., Ferreira Queiroz E., Shanmugabalaji V., Falquet J., Wolfender J.L. & Lopez-Molina L.:
The plant pathogen Pseudomonas aeruginosa triggers a DELLA-dependent seed germination arrest in Arabidopsis.
Elife 2018, 7. PMID: 30149837.

Hohmann U. & Hothorn M.:
Brassinosteroid sensing and signaling in plants.
In: Plant Structural Biology: Hormonal Regulations 2018, 149-164. Hejátko, J. and Hakoshima, T. (eds.) Springer, Cham, Switzerland. DOI: 10.1007/978-3-319-91352-0.

Shanmugabalaji V., Chahtane H., Accossato S., Rahire M., Gouzerh G., Lopez-Molina L. & Kessler F.:
Chloroplast Biogenesis Controlled by DELLA-TOC159 Interaction in Early Plant Development.
Curr Biol 2018, 28(16):2616-2623.e5. PMID: 30078560.

Saad M.M., Michalet S., Fossou R.K., Putnik-Delić M., Crèvecoeur M., Meyer J., De Malézieux C., Hopfgartner G., Maksimovic I. & Perret X.:
Loss of NifQ leads to accumulation of porphyrins and altered metal-homeostasis in nitrogen-fixing symbioses.
Mol Plant Microbe Interact 2018. PMID: 30070615.

Andermann T., Cano Á, Zizka A., Bacon C. & Antonelli A.:
SECAPR-a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments.
PeerJ 2018, 6:e5175. PMID: 30023140.

Zhang L., Pu H., Duan Z., Li Y., Liu B., Zhang Q., Li W., Rochaix J.D., Liu L. & Peng L.:
Nucleus-Encoded Protein BFA1 Promotes Efficient Assembly of the Chloroplast ATP Synthase Coupling Factor 1.
Plant Cell 2018, 30(8):1770-1788. PMID: 30012777.

Schreier T.B., Cléry A., Schläfli M., Galbier F., Stadler M., Demarsy E., Albertini D., Maier B.A., Kessler F., Hörtensteiner S., Zeeman S.C. & Kötting O.:
Plastidial NAD-Dependent Malate Dehydrogenase: A Moonlighting Protein Involved in Early Chloroplast Development through Its Interaction with an FtsH12-FtsHi Protease Complex.
Plant Cell 2018, 30(8):1745-1769. PMID: 29934433.

Schumacher P., Demarsy E., Waridel P., Petrolati L.A., Trevisan M. & Fankhauser C.:
A phosphorylation switch turns a positive regulator of phototropism into an inhibitor of the process.
Nat Commun 2018, 9(1):2403. PMID: 29921904.

Loubéry S., De Giorgi J., Utz-Pugin A., Demonsais L. & Lopez-Molina L.:
A Maternally Deposited Endosperm Cuticle Contributes to the Physiological Defects of transparent testa Seeds.
Plant Physiol 2018, 177(3):1218-1233. PMID: 29848749.

Anne P., Amiguet-Vercher A., Brandt B., Kalmbach L., Geldner N., Hothorn M. & Hardtke C.S.:
CLERK is a novel receptor kinase required for sensing of root-active CLE peptides in Arabidopsis.
Development 2018, 145(10):dev162354. PMID: 29789310.

Podolec R. & Ulm R.:
Photoreceptor-mediated regulation of the COP1/SPA E3 ubiquitin ligase.
Curr Opin Plant Biol 2018, 45(Pt A):18-25. PMID: 29775763.

Luedin S.M., Pothier J.F., Danza F., Storelli N., Frigaard N.U., Wittwer M. & Tonolla M.:
Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno.
Stand Genomic Sci 2018, 13:14. PMID: 29774086.

Dogra V., Rochaix J.D. & Kim C.:
Singlet oxygen-triggered chloroplast-to-nucleus retrograde signalling pathways: An emerging perspective.
Plant Cell Environ 2018, 41(8):1727-1738. PMID: 29749057.

Hohmann U., Nicolet J., Moretti A., Hothorn L.A. & Hothorn M.:
The SERK3 elongated allele defines a role for BIR ectodomains in brassinosteroid signalling.
Nat Plants 2018. PMID: 29735985.

Ravasi D., Guidi V., Flacio E., Lüthy P., Perron K., Lüdin S. & Tonolla M.:
Investigation of temperature conditions in Swiss urban and suburban microhabitats for the overwintering suitability of diapausing Aedes albopictus eggs.
Parasit Vectors 2018, 11(1):212. PMID: 29587850.

Gonzalez M.R., Ducret V., Leoni S., Fleuchot B., Jafari P., Raffoul W., Applegate L.A., Que Y.A. & Perron K.:
Transcriptome Analysis of Pseudomonas aeruginosa Cultured in Human Burn Wound Exudates.
Front Cell Infect Microbiol 2018, 8:39. PMID: 29535973.

Hohmann U., Santiago J., Nicolet J., Olsson V., Spiga F.M., Hothorn L.A., Butenko M.A. & Hothorn M.:
Mechanistic basis for the activation of plant membrane receptor kinases by SERK-family coreceptors.
Proc Natl Acad Sci U S A 2018, 115(13):3488-3493. PMID: 29531026.

Moriconi V., Binkert M., Costigliolo C., Sellaro R., Ulm R. & Casal J.J.:
Perception of Sunflecks by the UV-B Photoreceptor UV RESISTANCE LOCUS8.
Plant Physiol 2018, 177(1):75-81. PMID: 29530938.

Rochaix J.D., Kim C. & Apel W.:
Klaus Apel (1942-2017): a pioneer of photosynthesis research.
Photosynth Res 2018. PMID: 29453665.

Gonzalez M.R., Ducret V., Leoni S. & Perron K.:
Pseudomonas aeruginosa zinc homeostasis: Key issues for an opportunistic pathogen.
Biochim Biophys Acta 2018. PMID: 29410128.

Bauer C , Duwald R , Labrador GM , Pascal S , Moneva Lorente P , Bosson J , Lacour J & Rochaix JD :
Specific labeling of mitochondria of Chlamydomonas with cationic helicene fluorophores.
Org Biomol Chem 2018, 16(6):919-923. PMID: 29334105.

Lang D., Ullrich K.K., Murat F., Fuchs J., Jenkins J., Haas F.B., Piednoel M., Gundlach H., Van Bel M., Meyberg R., Vives C., Morata J., Symeonidi A., Hiss M., Muchero W., Kamisugi Y., Saleh O., Blanc G., Decker E.L., van Gessel N., Grimwood J., Hayes R.D., Graham S.W., Gunter L.E., McDaniel S.F., Hoernstein S.N.W., Larsson A., Li F.W., Perroud P.F., Phillips J., Ranjan P., Rokshar D.S., Rothfels C.J., Schneider L., Shu S., Stevenson D.W., Thümmler F., Tillich M., Villarreal Aguilar J.C., Widiez T., Wong G.K., Wymore A., Zhang Y., Zimmer A.D., Quatrano R.S., Mayer K.F.X., Goodstein D., Casacuberta J.M., Vandepoele K., Reski R., Cuming A.C., Tuskan G.A., Maumus F., Salse J., Schmutz J. & Rensing S.A.:
The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.
Plant J 2018, 93(3):515-533. PMID: 29237241.

Demarsy E., Goldschmidt-Clermont M. & Ulm R.:
Coping with 'Dark Sides of the Sun' through Photoreceptor Signaling.
Trends Plant Sci 2018, 23(3):260-271. PMID: 29233601.

 

2017

Rochaix J.D. & Ramundo S.:
Chloroplast signaling and quality control.
Essays Biochem 2017. PMID: 29273583.

Danza F., Storelli N., Roman S., Lüdin S. & Tonolla M.:
Dynamic cellular complexity of anoxygenic phototrophic sulfur bacteria in the chemocline of meromictic Lake Cadagno.
PLoS One 2017, 12(12):e0189510. PMID: 29245157.

Jiang L., Anderson J.C., Besteiro M.A.G. & Peck S.C.:
Phosphorylation of Arabidopsis MAP Kinase Phosphatase 1 (MKP1) Is Required for PAMP Responses and Resistance against Bacteria.

Plant Physiol 2017, 175(4):1839-1852. PMID: 29070514.

Binkert M. & Ulm R.:
UV-B signal transduction from photoperception to response.
In: UV-B radiation and Plant Life: Molecular Biology to Ecology, Jordan, B.R. (ed.) CABI press, Oxford, UK, pp. 130-143. Link.

Rochaix J.D.:
The Pyrenoid: An Overlooked Organelle Comes out of Age.
Cell 2017, 171(1):28-29. PMID: 28938119.

Jung J.Y., Ried M.K., Hothorn M. & Poirier Y.:
Control of plant phosphate homeostasis by inositol pyrophosphates and the SPX domain.
Curr Opin Biotechnol 2017, 49:156-162. PMID: 28889038.

Posth N.R., Bristow L.A., Cox R.P., Habicht K.S., Danza F., Tonolla M., Frigaard N.U. & Canfield D.E.:
Carbon isotope fractionation by anoxygenic phototrophic bacteria in euxinic Lake Cadagno.
Geobiology 2017, 15(6):798-816. PMID: 28866873.

Mangel N., Fudge J.B., Fitzpatrick T.B., Gruissem W. & Vanderschuren H.:
Vitamin B1 diversity and characterization of biosynthesis genes in cassava.
J Exp Bot 2017, 68(13):3351-3363. PMID: 28859374.

Moejes F.W., Matuszynska A., Adhikari K., Bassi R., Cariti F., Cogne G., Dikaios I., Falciatore A., Finazzi G., Flori S., Goldschmidt-Clermont M., Magni S., Maguire J., Le Monnier A., Müller K., Poolman M., Singh D., Spelberg S., Stella G.R., Succurro A., Taddei L., Urbain B., Villanova V., Zabke C. & Ebenhöh O.:
A systems-wide understanding of photosynthetic acclimation in algae and higher plants.
J Exp Bot 2017, 68(11):2667-2681. PMID: 28830099.

Zhao L., Cheng D., Huang X., Chen M., Dall'Osto L., Xing J., Gao L., Li L., Wang Y., Bassi R., Peng L., Wang Y., Rochaix J.D. & Huang F.:
A Light Harvesting Complex-Like Protein in Maintenance of Photosynthetic Components in Chlamydomonas.
Plant Physiol 2017, 174(4):2419-2433. PMID: 28637830.

Hazak O., Brandt B., Cattaneo P., Santiago J., Rodriguez-Villalon A., Hothorn M. & Hardtke C.S.:
Perception of root-active CLE peptides requires CORYNE function in the phloem vasculature.
EMBO Rep 2017, 18(8):1367-1381. PMID: 28607033.

Dell'Aglio E., Boycheva S. & Fitzpatrick T.B.:
The Pseudoenzyme PDX1.2 Sustains Vitamin B6 Biosynthesis as a Function of Heat Stress.
Plant Physiol 2017, 174(4):2098-2112. PMID: 28550206.

Kerruth S., Langner P., Raffelberg S., Gärtner W. & Heberle J.:
Characterization of the Blue-Light-Activated Adenylyl Cyclase mPAC by Flash Photolysis and FTIR Spectroscopy.
Photochem Photobiol 2017, 93(3):857-864. PMID: 28500710.

Zufferey M., Montandon C., Douet V., Demarsy E., Agne B., Baginsky S. & Kessler F.:
The novel chloroplast outer membrane kinase KOC1 is a required component of the plastid protein import machinery.
J Biol Chem 2017, 292(17):6952-6964. PMID: 28283569.

Yin R.:
Cooling Down Thermomorphogenesis by UV-B Signaling.
Trends Plant Sci 2017, 22(6):447-449. PMID: 28438558.

Yin R. & Ulm R.:
How plants cope with UV-B: from perception to response.
Curr Opin Plant Biol 2017, 37:42-48. PMID: 28411583.

Van Der Straeten D., Fitzpatrick T.B. & De Steur H.:
Editorial overview: Biofortification of crops: achievements, future challenges, socio-economic, health and ethical aspects.
Curr Opin Biotechnol 2017, 44:vii-x. PMID: 28342725.

Faè M., Accossato S., Cella R., Fontana F., Goldschmidt-Clermont M., Leelavathi S., Reddy V.S. & Longoni P.:
Comparison of transplastomic Chlamydomonas reinhardtii and Nicotiana tabacum expression system for the production of a bacterial endoglucanase.
Appl Microbiol Biotechnol 2017, 101(10):4085-4092. PMID: 28190097.

Hohmann U., Lau K. & Hothorn M.:
The Structural Basis of Ligand Perception and Signal Activation by Receptor Kinases.
Annu Rev Plant Biol 2017, 68:109-137. PMID: 28125280.

Fudge J., Mangel N., Gruissem W., Vanderschuren H. & Fitzpatrick T.B.:
Rationalising vitamin B6 biofortification in crop plants.
Curr Opin Biotechnol 2017, 44:130-137. PMID: 28086191.

Catoni M., Griffiths J., Becker C., Zabet N.R., Bayon C., Dapp M., Lieberman-Lazarovich M., Weigel D. & Paszkowski J.:
DNA sequence properties that predict susceptibility to epiallelic switching.
EMBO J 2017, 36(5):617-628. PMID: 28069706.

Bernula P., Crocco C.D., Arongaus A.B., Ulm R., Nagy F. & Viczián A.:
Expression of the UVR8 photoreceptor in different tissues reveals tissue-autonomous features of UV-B signalling.
Plant Cell Environ 2017. PMID: 28058744.

Hayes S., Sharma A., Fraser D.P., Trevisan M., Cragg-Barber C.K., Tavridou E., Fankhauser C., Jenkins G.I. & Franklin K.A.:
UV-B Perceived by the UVR8 Photoreceptor Inhibits Plant Thermomorphogenesis.
Curr Biol 2017, 27(1):120-127. PMID: 27989670.

 

2016

Piskurewicz U., Iwasaki M., Susaki D., Megies C., Kinoshita T. & Lopez-Molina L.:
Dormancy-specific imprinting underlies maternal inheritance of seed dormancy in Arabidopsis thaliana.
Elife 2016, 5. PMID: 28005006.

Allorent G., Lefebvre-Legendre L., Chappuis R., Kuntz M., Truong T.B., Niyogi K.K., Ulm R. & Goldschmidt-Clermont M.:
UV-B photoreceptor-mediated protection of the photosynthetic machinery in Chlamydomonas reinhardtii.
Proc Natl Acad Sci U S A 2016, 113(51):14864-14869. PMID: 27930292.

Fossou R.K., Ziegler D., Zézé A., Barja F. & Perret X.:
Two Major Clades of Bradyrhizobia Dominate Symbiotic Interactions with Pigeonpea in Fields of Côte d'Ivoire.
Front Microbiol 2016, 7:1793. PMID: 27891120.

Wassem R., Marin A.M., Daddaoua A., Monteiro R.A., Chubatsu L.S., Ramos J.L., Deakin W.J., Broughton W.J., Pedrosa F.O. & Souza E.M.:
A NodD-like protein activates transcription of genes involved with naringenin degradation in a flavonoid-dependent manner in Herbaspirillum seropedicae.
Environ Microbiol 2016. PMID: 27878922.

Fankhauser C. & Ulm R.:
A photoreceptor's on-off switch.
Science 2016, 354(6310):282-283. PMID: 27846514.

Wild R. & Hothorn M.:
The macro domain as fusion tag for carrier-driven crystallization.
Protein Sci 2017, 26(2):365-374. PMID: 27774698.

Chen M., Zhang J., Zhao L., Xing J., Peng L., Kuang T., Rochaix J.D. & Huang F.:
Loss of algal Proton Gradient Regulation 5 increases reactive oxygen species scavenging and H2 evolution.
J Integr Plant Biol 2016, 58(12):943-946. PMID: 27762070.

Chahtane H., Kim W. & Lopez-Molina L.:
Primary seed dormancy: a temporally multilayered riddle waiting to be unlocked.
J Exp Bot 2016. PMID: 27729475.

Pietzenuk B., Markus C., Gaubert H., Bagwan N., Merotto A., Bucher E. & Pecinka A.:
Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements.
Genome Biol 2016, 17(1):209. PMID: 27729060.

Denay G., Chahtane H., Tichtinsky G. & Parcy F.:
A flower is born: an update on Arabidopsis floral meristem formation.
Curr Opin Plant Biol 2016, 35:15-22. PMID: 27721031.

Ducret V., Gonzalez M.R., Scrignari T. & Perron K.:
OprD Repression upon Metal Treatment Requires the RNA Chaperone Hfq in Pseudomonas aeruginosa.
Genes 2016, 7(10):E82. PMID: 27706108.

Robinson G.C., Kaufmann M., Roux C. & Fitzpatrick T.B.:
Structural definition of the lysine swing in Arabidopsis thaliana PDX1: Intermediate channeling facilitating vitamin B6 biosynthesis.
Proc Natl Acad Sci U S A 2016, 113(40):E5821-E5829. PMID: 27647886.

Feng P., Guo H., Chi W., Chai X., Sun X., Xu X., Ma J., Rochaix J.D., Leister D., Wang H., Lu C. & Zhang L.:
Chloroplast retrograde signal regulates flowering.
Proc Natl Acad Sci U S A 2016. PMID: 27601637.

Guo H., Feng P., Chi W., Sun X., Xu X., Li Y., Ren D., Lu C., Rochaix J.D., Leister D. & Zhang L.:
Plastid-nucleus communication involves calcium-modulated MAPK signalling.
Nat Commun 2016, 7:12173. PMID: 27399341.

Yin R., Skvortsova M.Y., Loubéry S. & Ulm R.:
COP1 is required for UV-B-induced nuclear accumulation of the UVR8 photoreceptor.
Proc Natl Acad Sci U S A 2016, 113(30):E4415-22. PMID: 27407149.

Hofer A., Marques E., Kieliger N., Gatter S.K., Jordi S., Ferrari E., Hofmann M., Fitzpatrick T.B., Hottiger M.O. & Jessen H.J.:
Chemoselective Dimerization of Phosphates.
Org Lett 2016, 18(13):3222-5. PMID: 27308921.

Chi W., Li J., He B., Chai X., Xu X., Sun X., Jiang J., Feng P., Zuo J., Lin R., Rochaix J.D. & Zhang L.:
DEG9, a serine protease, modulates cytokinin and light signaling by regulating the level of ARABIDOPSIS RESPONSE REGULATOR 4.
Proc Natl Acad Sci U S A 2016, 113(25):E3568-76. PMID: 27274065.

Flacio E., Engeler L., Tonolla M. & Müller P.:
Spread and establishment of Aedes albopictus in southern Switzerland between 2003 and 2014: an analysis of oviposition data and weather conditions.
Parasit Vectors 2016, 9(1):304. PMID: 27229686.

Gonzalez M.R., Fleuchot B., Lauciello L., Jafari P., Applegate L.A., Raffoul W., Que Y.A. & Perron K.:
Effect of Human Burn Wound Exudate on Pseudomonas aeruginosa Virulence.
mSphere 2016, 1(2):e00111-15. PMID: 27303724.

Douchi D., Qu Y., Longoni P., Legendre-Lefebvre L., Johnson X., Schmitz-Linneweber C. & Goldschmidt-Clermont M.:
A Nucleus-Encoded Chloroplast Phosphoprotein Governs Expression of the Photosystem I Subunit PsaC in Chlamydomonas reinhardtii.
Plant Cell 2016, 28(5):1182-99. PMID: 27113776.

Wild R., Gerasimaite R., Jung J.Y., Truffault V., Pavlovic I., Schmidt A., Saiardi A., Jessen H.J., Poirier Y., Hothorn M. & Mayer A.:
Control of eukaryotic phosphate homeostasis by inositol polyphosphate sensor domains.
Science 2016, 352(6288):986-90. PMID: 27080106.

Santiago J., Brandt B., Wildhagen M., Hohmann U., Hothorn L.A., Butenko M.A. & Hothorn M.:
Mechanistic insight into a peptide hormone signaling complex mediating floral organ abscission.
Elife 2016, 5. PMID: 27058169.

Tilbrook K., Dubois M., Crocco C.D., Yin R., Chappuis R., Allorent G., Schmid-Siegert E., Goldschmidt-Clermont M. & Ulm R.:
UV-B perception and acclimation in Chlamydomonas reinhardtii.
Plant Cell 2016, 28(4):966-83. PMID: 27020958.

Colinas M. & Fitzpatrick T.B.:
Interaction between vitamin B6 metabolism, nitrogen metabolism and autoimmunity.
Plant Signal Behav 2016, Mar 28:0. PMID: 27018849.

Martinis J., Gas-Pascual E., Szydlowski N., Crèvecoeur M., Gisler A., Bürkle L. & Fitzpatrick T.B.:
Long distance transport of thiamine (vitamin B1) is concomitant with that of polyamines in Arabidopsis.
Plant Physiol 2016, 171(1):542-53. PMID: 27006489.

Brandt B. & Hothorn M.:
SERK co-receptor kinases.
Curr Biol 2016, 26(6):R225-6. PMID: 27003880.

Shapiguzov A., Chai X., Fucile G., Longoni P., Zhang L. & Rochaix J.D.:
Activation of the Stt7/STN7 kinase through dynamic interactions with the cytochrome b6f complex.
Plant Physiol 2016, 171(1):82-92. PMID: 26941194.

Abdel-Sayed P., Kaeppeli A., Siriwardena T., Darbre T., Perron K., Jafari P., Reymond J.L., Pioletti D.P. & Applegate L.A.:
Anti-Microbial Dendrimers against Multidrug-Resistant P. aeruginosa Enhance the Angiogenic Effect of Biological Burn-wound Bandages.
Sci Rep 2016, 6:22020. PMID: 26912450.

Piskurewicz U. & Lopez-Molina L.:
Basic Techniques to Assess Seed Germination Responses to Abiotic Stress in Arabidopsis thaliana.
Methods Mol Biol 2016, 1398:183-96. PMID: 26867624.

Binkert M., Crocco C.D., Ekundayo B., Lau K., Raffelberg S., Tilbrook K., Yin R., Chappuis R., Schalch T. & Ulm R.:
Revisiting chromatin binding of the Arabidopsis UV-B photoreceptor UVR8.
BMC Plant Biol 2016, 16(1):42. PMID: 26864020.

Colinas M., Eisenhut M., Tohge T., Pesquera M., Fernie A.R., Weber A.P. & Fitzpatrick T.B.:
Balancing of B6 Vitamers Is Essential for Plant Development and Metabolism in Arabidopsis.
Plant Cell 2016, 28(2):439-53. PMID: 26858304.

Pasche S., Calmin G., Auderset G., Crovadore J., Pelleteret P., Mauch-Mani B., Barja F., Paul B., Jermini M. & Lefort F.:
Gnomoniopsis smithogilvyi causes chestnut canker symptoms in Castanea sativa shoots in Switzerland.
Fungal Genet Biol 2016, 87:9-21. PMID: 26768710.

Andrés-Barrao C., Saad M.M., Cabello Ferrete E., Bravo D., Chappuis M.L., Ortega Pérez R., Junier P., Perret X. & Barja F.:
Metaproteomics and ultrastructure characterization of Komagataeibacter spp. involved in high-acid spirit vinegar production.
Food Microbiol 2016, 55:112-22. PMID: 26742622.

 

2015

De Giorgi J., Piskurewicz U., Loubery S., Utz-Pugin A., Bailly C., Mène-Saffrané L. & Lopez-Molina L.:
An Endosperm-Associated Cuticle Is Required for Arabidopsis Seed Viability, Dormancy and Early Control of Germination.
PLoS Genet 2015, 11(12):e1005708. PMID: 26681322.

Lefebvre-Legendre L., Reifschneider O., Kollipara L., Sickmann A., Wolters D., Kück U. & Goldschmidt-Clermont M.:
A pioneer protein is part of a large complex involved in trans-splicing of a group II intron in the chloroplast of Chlamydomonas reinhardtii.
Plant J 2016, 85(1):57-69. PMID: 26611495.

Munemasa S., Hauser F., Park J., Waadt R., Brandt B. & Schroeder J.I.:
Mechanisms of abscisic acid-mediated control of stomatal aperture.
Curr Opin Plant Biol 2015, 28:154-62. PMID: 26599955.

Li K.T., Moulin M., Mangel N., Albersen M., Verhoeven-Duif N.M., Ma Q., Zhang P., Fitzpatrick T.B., Gruissem W. & Vanderschuren H.:
Increased bioavailable vitamin B6 in field-grown transgenic cassava for dietary sufficiency.
Nat Biotechnol 2015, 33(10):1029-32. PMID: 26448082.

Longoni P., Douchi D., Cariti F., Fucile G. & Goldschmidt-Clermont M.:
Phosphorylation of the Light-Harvesting Complex II Isoform Lhcb2 Is Central to State Transitions.
Plant Physiol 2015, 169(4):2874-83. PMID: 26438789.

Caine M., Horié N., Zuchuat S., Weber A., Ducret V., Linder P. & Perron K.:
A 3D-DNA Molecule Made of PlayMais.
Sci Act 2015, 52(2):31-44. DOI: 10.1080/00368121.2015.1029427.

Caine M., Zuchuat S., Weber A., Ducret V., Linder P. & Perron K.:
BiOutils: an interface to connect university laboratories with microbiology classes in schools.
FEMS Microbiol Lett 2015, 362(20):fnv171. PMID: 26391525.

Kang J., Yim S., Choi H., Kim A., Lee K.P., Lopez-Molina L., Martinoia E. & Lee Y.:
Abscisic acid transporters cooperate to control seed germination.
Nat Commun 2015, 6:8113. PMID: 26334616.

Dapp M., Reinders J., Bédiée A., Balsera C., Bucher E., Theiler G., Granier C. & Paszkowski J.:
Heterosis and inbreeding depression of epigenetic Arabidopsis hybrids.
Nat Plants 2015, 1:15092. PMID: 27250257.

Martinez J., Truffault V. & Hothorn M.:
Structural Determinants for Substrate Binding and Catalysis in Triphosphate Tunnel Metalloenzymes.
J Biol Chem 2015, 290(38):23348-60. PMID: 26221030.

Ulm R. & Jenkins G.I.:
Q&A: How do plants sense and respond to UV-B radiation?.
BMC Biol 2015, 13(1):45. PMID: 26123292.

Colinas M. & Fitzpatrick T.B.:
Natures balancing act: examining biosynthesis de novo, recycling and processing damaged vitamin B metabolites.
Curr Opin Plant Biol 2015, 25:98-106. PMID: 26005929.

Goldschmidt-Clermont M. & Bassi R.:
Sharing light between two photosystems: mechanism of state transitions.
Curr Opin Plant Biol 2015, 25:71-78. PMID: 26002067.

Flacio E., Engeler L., Tonolla M., Lüthy P. & Patocchi N.:
Strategies of a thirteen year surveillance programme on Aedes albopictus (Stegomyia albopicta) in southern Switzerland.
Parasit Vectors 2015, 8(1):208. PMID: 25890173.

Bergner S.V., Scholz M., Trompelt K., Barth J., Gäbelein P., Steinbeck J., Xue H., Clowez S., Fucile G., Goldschmidt-Clermont M., Fufezan C. & Hippler M.:
STATE TRANSITION7-Dependent Phosphorylation Is Modulated by Changing Environmental Conditions, and Its Absence Triggers Remodeling of Photosynthetic Protein Complexes.
Plant Physiol 2015, 168(2):615-34. PMID: 25858915.

Ziegler D., Pothier J.F., Ardley J., Fossou R.K., Pflüger V., de Meyer S., Vogel G., Tonolla M., Howieson J., Reeve W. & Perret X.:
Ribosomal protein biomarkers provide root nodule bacterial identification by MALDI-TOF MS.
Appl Microbiol Biotechnol 2015, 99(13):5547-62. PMID: 25776061.

Lefebvre-Legendre L., Choquet Y., Kuras R., Loubéry S., Douchi D. & Goldschmidt-Clermont M.:
A Nucleus-Encoded Chloroplast Protein Regulated by Iron Availability Governs Expression of the Photosystem I Subunit PsaA in Chlamydomonas reinhardtii.
Plant Physiol 2015, 167(4):1527-40. PMID: 25673777.

Yin R., Arongaus A.B., Binkert M. & Ulm R.:
Two Distinct Domains of the UVR8 Photoreceptor Interact with COP1 to Initiate UV-B Signaling in Arabidopsis.
Plant Cell 2015, 27(1):202-13. PMID: 25627067.

Ramundo S. & Rochaix J.D.:
Controlling Expression of Genes in the Unicellular Alga Chlamydomonas reinhardtii with a Vitamin-Repressible Riboswitch.
Methods Enzymol 2015, 550:267-81. PMID: 25605390.

Trček J. & Barja F.:
Updates on quick identification of acetic acid bacteria with a focus on the 16S-23S rRNA gene internal transcribed spacer and the analysis of cell proteins by MALDI-TOF mass spectrometry.
Int J Food Microbiol 2015, 196:137-44. PMID: 25589227.

Rochaix J.D. & Ramundo S.:
Conditional repression of essential chloroplast genes: Evidence for new plastid signaling pathways.
Biochim Biophys Acta 2015, 1847(9):986-92. PMID: 25486627.

Boycheva S., Dominguez A., Rolcik J., Boller T. & Fitzpatrick T.B.:
Consequences of a deficit in vitamin B6 biosynthesis de novo for hormone homeostasis and root development in Arabidopsis.
Plant Physiol 2015, 167(1):102-17. PMID: 25475669.

Sein-Echaluce V.C., González A., Napolitano M., Luque I., Barja F., Peleato M.L. & Fillat M.F.:
Zur (FurB) is a key factor in the control of the oxidative stress response in Anabaena sp. PCC 7120.
Environ Microbiol 2015, 17(6):2006-17. PMID: 25244409.

 

2014

Simoes-Pires C., Hostettmann K., Haouala A., Cuendet M., Falquet J., Graz B. & Christen P.:
Reverse pharmacology for developing an anti-malarial phytomedicine. The example of Argemone mexicana.
Int J Parasitol Drugs Drug Resist 2014, 4(3):338-46. PMID: 25516845.

Ramundo S. & Rochaix J.D.:
Chloroplast unfolded protein response, a new plastid stress signaling pathway?.
Plant Signal Behav 2014, 9(10):e972874. PMID: 25482768.

Chi W., He B., Manavski N., Mao J., Ji D., Lu C., Rochaix J.D., Meurer J. & Zhang L.:
RHON1 Mediates a Rho-Like Activity for Transcription Termination in Plastids of Arabidopsis thaliana.
Plant Cell 2014, 26(12):4918-32. PMID: 25480370.

Marguerettaz M., Dieppois G., Que Y.A., Ducret V., Zuchuat S. & Perron K.:
Sputum containing zinc enhances carbapenem resistance, biofilm formation and virulence of Pseudomonas aeruginosa.
Microb Pathog 2014, 77C:36-41. PMID: 25448466.

Sanchez D.H. & Paszkowski J.:
Heat-induced release of epigenetic silencing reveals the concealed role of an imprinted plant gene.
PLoS Genet 2014, 10(11):e1004806. PMID: 25411840.

Binkert M., Kozma-Bognár L., Terecskei K., De Veylder L., Nagy F. & Ulm R.:
UV-B-Responsive Association of the Arabidopsis bZIP Transcription Factor ELONGATED HYPOCOTYL5 with Target Genes, Including Its Own Promoter.
Plant Cell 2014, 26(10):4200-13. PMID: 25351492.

Fitzpatrick T.B. & Thore S.:
Complex behavior: from cannibalism to suicide in the vitamin B1 biosynthesis world.
Curr Opin Struct Biol 2014, 29C:34-43. PMID: 25260119.

Castaño F., Stauffer F., Marquinez X., Crèvecoeur M., Collin M., Pintaud J.C. & Tregear J.:
Floral structure and development in the monoecious palm Gaussia attenuata (Arecaceae; Arecoideae).
Ann Bot 2014, 114(7):1483-95. PMID: 25006179.

Deakin S.P., Ducret V., Bioletto S., Perron K. & James R.W.:
Modulating reconstituted high density lipoprotein functionality to target the Pseudomonas aeruginosa quorum sensing system.
Life Sci 2014, 112(1-2):68-73. PMID: 25086378.

Lefebvre-Legendre L., Merendino L., Rivier C. & Goldschmidt-Clermont M.:
On the Complexity of Chloroplast RNA Metabolism: psaA Trans-splicing Can be Bypassed in Chlamydomonas.
Mol Biol Evol 2014, 31(10):2697-707. PMID: 25053803.

Ramundo S. & Rochaix J.D.:
Loss of chloroplast ClpP elicits an autophagy-like response in Chlamydomonas.
Autophagy 2014, 10(9):1685-1686. PMID: 25046108.

Iwasaki M. & Paszkowski J.:
Identification of genes preventing transgenerational transmission of stress-induced epigenetic states.
Proc Natl Acad Sci U S A 2014, 111(23):8547-52. PMID: 24912148.

Ramundo S., Casero D., Mühlhaus T., Hemme D., Sommer F., Crèvecoeur M., Rahire M., Schroda M., Rusch J., Goodenough U., Pellegrini M., Perez-Perez M.E., Crespo J.L., Schaad O., Civic N. & Rochaix J.D.:
Conditional Depletion of the Chlamydomonas Chloroplast ClpP Protease Activates Nuclear Genes Involved in Autophagy and Plastid Protein Quality Control.
Plant Cell 2014, 26(5):2201-2222. PMID: 24879428.

Biloa Messi B., Ho R., Meli Lannang A., Cressend D., Perron K., Nkengfack A.E., Carrupt P.A., Hostettmann K. & Cuendet M.:
Isolation and biological activity of compounds from Garcinia preussii.
Pharm Biol 2014, 52(6):706-11. PMID: 24824323.

Widiez T., Symeonidi A., Luo C., Lam E., Lawton M. & Rensing S.A.:
The chromatin landscape of the moss Physcomitrella patens and its dynamics during development and drought stress.
Plant J 2014, 79(1):67-81. PMID: 24779858.

Vandenbussche F., Tilbrook K., Fierro A.C., Marchal K., Poelman D., Van Der Straeten D. & Ulm R.:
Photoreceptor-mediated bending towards UV-B in Arabidopsis.
Mol Plant 2014, 7(6):1041-52. PMID: 24711292.

Colinas M., Shaw H.V., Loubéry S., Kaufmann M., Moulin M. & Fitzpatrick T.B.:
A Pathway for Repair of NAD(P)H in Plants.
J Biol Chem 2014, 289(21):14692-706. PMID: 24706747.

Rochaix J.D., Surzycki R. & Ramundo S.:
Tools for regulated gene expression in the chloroplast of chlamydomonas.
Methods Mol Biol 2014, 1132:413-24. PMID: 24599871.

Ebenhöh O., Fucile G., Finazzi G., Rochaix J.D. & Goldschmidt-Clermont M.:
Short-term acclimation of the photosynthetic electron transfer chain to changing light: a mathematical model.
Philos Trans R Soc Lond B Biol Sci 2014, 369(1640):20130223. PMID: 24591710.

Boycheva S., Daviet L., Wolfender J.L. & Fitzpatrick T.B.:
The rise of operon-like gene clusters in plants.
Trends Plant Sci 2014, 19(7):447-59. PMID: 24582794.

Moccand C., Boycheva S., Surriabre P., Tambasco-Studart M., Raschke M., Kaufmann M. & Fitzpatrick T.B.:
The pseudoenzyme PDX1.2 boosts vitamin B6 biosynthesis under heat and oxidative stress in Arabidopsis.
J Biol Chem 2014, 289(12):8203-16. PMID: 24505140.

Rochaix J.D.:
Regulation and dynamics of the light-harvesting system.
Annu Rev Plant Biol 2014, 65:287-309. PMID: 24471838.

Arnold J., Shapiguzov A., Fucile G., Rochaix J.D., Goldschmidt-Clermont M. & Eichacker L.A.:
Separation of Membrane Protein Complexes by Native LDS-PAGE.
Methods Mol Biol 2014, 1072:667-76. PMID: 24136555.

 

2013

Baratti-Mayer D., Gayet-Ageron A., Hugonnet S., François P., Pittet-Cuenod B., Huyghe A., Bornand J.E., Gervaix A., Montandon D., Schrenzel J., Mombelli A. & Pittet D.; Geneva Study Group on Noma (GESNOMA):
Risk factors for noma disease: a 6-year, prospective, matched case-control study in Niger.
Lancet Glob Health 2013, 1(2):e87-96. PMID: 25104163.

Lieberman-Lazarovich M., Melamed-Bessudo C., de Pater S. & Levy A.A.:
Epigenetic alterations at genomic loci modified by gene targeting in Arabidopsis thaliana.
PLoS One 2013, 8(12):e85383. PMID: 24386472.

Neteler M., Metz M., Rocchini D., Rizzoli A., Flacio E., Engeler L., Guidi V., Lüthy P. & Tonolla M.:
Is Switzerland Suitable for the Invasion ofAedes albopictus?.
PLoS One 2013, 8(12):e82090. PMID: 24349190.

Loizeau K., Qu Y., Depp S., Fiechter V., Ruwe H., Lefebvre-Legendre L., Schmitz-Linneweber C. & Goldschmidt-Clermont M.:
Small RNAs reveal two target sites of the RNA-maturation factor Mbb1 in the chloroplast of Chlamydomonas.
Nucleic Acids Res 2013. PMID: 24335082.

Dinc E., Ramundo S., Croce R. & Rochaix J.D.:
Repressible chloroplast gene expression in Chlamydomonas: A new tool for the study of the photosynthetic apparatus.
Biochim Biophys Acta 2013. PMID: 24333785.

Lee K.P. & Lopez-Molina L.:
A seed coat bedding assay to genetically explore in vitro how the endosperm controls seed germination in Arabidopsis thaliana.
J Vis Exp 2013, (81):e50732. PMID: 24300527.

Heijde M., Binkert M., Yin R., Ares-Orpel F., Rizzini L., Van De Slijke E., Persiau G., Nolf J., Gevaert K., De Jaeger G. & Ulm R.:
Constitutively active UVR8 photoreceptor variant in Arabidopsis.
Proc Natl Acad Sci U S A 2013, 110(50):20326-31. PMID: 24277841.

Coquille S., Roux C., Mehta A., Begley T.P., Fitzpatrick T.B. & Thore S.:
High-resolution crystal structure of the eukaryotic HMP-P synthase (THIC) from Arabidopsis thaliana.
J Struct Biol 2013, 184(3):438-44. PMID: 24161603.

Rochaix J.D.:
Fine-Tuning Photosynthesis.
Science 2013, 342(6154):50-51. PMID: 24092720.

Huyghe A., François P., Mombelli A., Tangomo M., Girard M., Baratti-Mayer D., Bolivar I., Pittet D. & Schrenzel J; Geneva Study Group on Noma:
Microarray analysis of microbiota of gingival lesions in noma patients.
PLoS Negl Trop Dis 2013, 7(9):e2453. PMID: 24086784.

Moulin M., Nguyen G.T., Scaife M.A., Smith A.G. & Fitzpatrick T.B.:
Analysis of Chlamydomonas thiamin metabolism in vivo reveals riboswitch plasticity.
Proc Natl Acad Sci U S A 2013, 110(36):14622-7. PMID: 23959877.

Guidi V., Lüthy P. & Tonolla M.:
Comparison between diflubenzuron and a Bacillus thuringiensis israelensis- and Lysinibacillus sphaericus-based formulation for the control of mosquito larvae in urban catch basins in Switzerland.
J Am Mosq Control Assoc 2013, 29(2):138-45. PMID: 23923328.

Tilbrook K., Arongaus A.B., Binkert M., Heijde M., Yin R. & Ulm R.:
The UVR8 UV-B Photoreceptor: Perception, Signaling and Response.
Arabidopsis Book 2013, 11:e0164. PMID: 23864838.

Reinders J., Mirouze M., Nicolet J. & Paszkowski J.:
Parent-of-origin control of transgenerational retrotransposon proliferation in Arabidopsis.
EMBO Rep 2013. PMID: 23835507.

Pourcel L., Moulin M. & Fitzpatrick T.B.:
Examining strategies to facilitate vitamin B1 biofortification of plants by genetic engineering.
Front Plant Sci 2013, 4:160. PMID: 23755056.

Vanderschuren H., Boycheva S., Li K.T., Szydlowski N., Gruissem W. & Fitzpatrick T.B.:
Strategies for vitamin B6 biofortification of plants: a dual role as a micronutrient and a stress protectant.
Front Plant Sci 2013, 4:143. PMID: 23734155.

Crefcoeur R.P., Yin R., Ulm R. & Halazonetis T.D.:
Ultraviolet-B-mediated induction of protein-protein interactions in mammalian cells.
Nat Commun 2013, 4:1779. PMID: 23653191.

Müller K., Engesser R., Schulz S., Steinberg T., Tomakidi P., Weber C.C., Ulm R., Timmer J., Zurbriggen M.D. & Weber W.:
Multi-chromatic control of mammalian gene expression and signaling.
Nucleic Acids Res 2013, 41(12):e124. PMID: 23625964.

Szydlowski N., Bürkle L., Pourcel L., Moulin M., Stolz J. & Fitzpatrick T.B.:
Recycling of pyridoxine (vitamin B6) by PUP1 in Arabidopsis.
Plant J 2013, 75(1):40-52. PMID: 23551747.

Rochaix J.D.:
Surprising roles for bilins in a green alga.
Proc Natl Acad Sci U S A 2013, 110(9):3218-9. PMID: 23412335.

Guidi V., Lehner A., Lüthy P. & Tonolla M.:
Dynamics of Bacillus thuringiensis var. israelensis and Lysinibacillus sphaericus Spores in Urban Catch Basins after Simultaneous Application against Mosquito Larvae.
PLoS One 2013, 8(2):e55658. PMID: 23390547.

Rochaix J.D.:
Redox regulation of thylakoid protein kinases and photosynthetic gene expression.
Antioxid Redox Signal 2013, 18(16):2184-201. PMID: 23339452.

Storelli N., Peduzzi S., Saad M.M., Frigaard N.U., Perret X. & Tonolla M.:
CO2 assimilation in the chemocline of Lake Cadagno is dominated by a few types of phototrophic purple sulfur bacteria.
FEMS Microbiol Ecol 2013, 84(2):421-32. PMID: 23330958.

Ramundo S., Rahire M., Schaad O. & Rochaix J.D.:
Repression of essential chloroplast genes reveals new signaling pathways and regulatory feedback loops in chlamydomonas.
Plant Cell 2013, 25(1):167-86. PMID: 23292734.

Heijde M. & Ulm R.:
Reversion of the Arabidopsis UV-B photoreceptor UVR8 to the homodimeric ground state.
Proc Natl Acad Sci U S A 2013, 110(3):1113-8. PMID: 23277547.

González Besteiro M.A. & Ulm R.:
ATR and MKP1 play distinct roles in response to UV-B stress in Arabidopsis.
Plant J 2013, 73(6):1034-43. PMID: 23237049.

González Besteiro M.A. & Ulm R.:
Phosphorylation and stabilization of Arabidopsis MAP kinase phosphatase 1 in response to UV-B stress.
J Biol Chem 2013, 288(1):480-6. PMID: 23188831.

Andrés-Barrao C., Benagli C., Chappuis M., Ortega Pérez R., Tonolla M. & Barja F.:
Rapid identification of acetic acid bacteria using MALDI-TOF mass spectrometry fingerprinting.
Syst Appl Microbiol 2013, 36(2):75-81. PMID: 23182036.

Shanmugabalaji V., Besagni C., Piller L.E., Douet V., Ruf S., Bock R. & Kessler F.:
Dual targeting of a mature plastoglobulin/fibrillin fusion protein to chloroplast plastoglobules and thylakoids in transplastomic tobacco plants.
Plant Mol Biol 2013, 81(1-2):13-25. PMID: 23086498.

 

2012

Rasheed-Depardieu C., Parent C., Crèvecoeur M., Parelle J., Tatin-Froux F., Le Provost G. & Capelli N.:
Identification and expression of nine oak aquaporin genes in the primary root axis of two oak species, Quercus petraea and Quercus robur.
PLoS One 2012, 7(12):e51838. PMID: 23284785.

Lee K.P. & Lopez-Molina L.:
Control of seed germination in the shade.
Cell Cycle 2012, 11(24):4489-90. PMID: 23165205.

Rochaix J.D., Lemeille S., Shapiguzov A., Samol I., Fucile G., Willig A. & Goldschmidt-Clermont M.:
Protein kinases and phosphatases involved in the acclimation of the photosynthetic apparatus to a changing light environment.
Philos Trans R Soc Lond B Biol Sci 2012, 367(1608):3466-74. PMID: 23148273.

Paszkowski J. & Martienssen R.A.:
Cell signaling and gene regulation.
Curr Opin Plant Biol 2012, 15(5):493-5. PMID: 23141671.

Coquille S., Roux C., Fitzpatrick T.B. & Thore S.:
The last piece in the vitamin B1 biosynthesis puzzle: structural and functional insight into yeast 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P) synthase.
J Biol Chem 2012, 287(50):42333-43. PMID: 23048037.

Lee K.P., Piskurewicz U., Tureckova V., Carat S., Chappuis R., Strnad M., Fankhauser C. & Lopez-Molina L.:
Spatially and genetically distinct control of seed germination by phytochromes A and B.
Genes Dev 2012, 26(17):1984-1996. PMID: 22948663.

Saad M.M., Crevecoeur M., Masson-Boivin C. & Perret X.:
The type 3 protein secretion system of Cupriavidus taiwanensis strain LMG19424 compromises symbiosis with Leucaena leucocephala.
Appl Environ Microbiol 2012, 78(20):7476-7479. PMID: 22865066.

Rahire M., Laroche F., Cerutti L. & Rochaix J.D.:
Identification of an OPR protein involved in the translation initiation of the PsaB subunit of photosystem I.
Plant J 2012, 72(4):652-661. PMID: 22817760.

Formighieri C., Ceol M., Bonente G., Rochaix J.D. & Bassi R.:
Retrograde Signaling and Photoprotection in a gun4 Mutant of Chlamydomonas reinhardtii.
Molecular plant 2012, 5(6):1242-1262. PMID: 22767629.

Samol I., Shapiguzov A., Ingelsson B., Fucile G., Crevecoeur M., Vener A.V., Rochaix J.D. & Goldschmidt-Clermont M.:
Identification of a photosystem II phosphatase involved in light acclimation in Arabidopsis.
Plant Cell 2012, 24(6):2596-2609. PMID: 22706287.

Dieppois G., Ducret V., Caille O. & Perron K.:
The Transcriptional Regulator CzcR Modulates Antibiotic Resistance and Quorum Sensing in Pseudomonas aeruginosa.
PLoS One 2012, 7(5):e38148. PMID: 22666466.

Ziegler D., Mariotti A., Pfluger V., Saad M., Vogel G., Tonolla M. & Perret X.:
In situ identification of plant-invasive bacteria with maldi-tof mass spectrometry.
PLoS One 2012, 7(5):e37189. PMID: 22615938.

Viczian A., Adam E., Wolf I., Bindics J., Kircher S., Heijde M., Ulm R., Schafer E. & Nagy F.:
A short amino-terminal part of Arabidopsis phytochrome a induces constitutive photomorphogenic response.
Molecular plant 2012, 5(3):103-115. PMID: 22498774.

Mirouze M., Lieberman-Lazarovich M., Aversano R., Bucher E., Nicolet J., Reinders J. & Paszkowski J.:
Loss of DNA methylation affects the recombination landscape in Arabidopsis.
Proc Natl Acad Sci U S A 2012, 109(15):5880-5885. PMID: 22451936.

Peduzzi S., Storelli N., Welsh A., Peduzzi R., Hahn D., Perret X. & Tonolla M.:
Candidatus "Thiodictyon syntrophicum", sp. nov., a new purple sulfur bacterium isolated from the chemocline of Lake Cadagno forming aggregates and specific associations with Desulfocapsa sp.
Systematic and applied microbiology 2012, 35(3):139-144. PMID: 22386960.

Fitzpatrick T.B., Basset G.J., Borel P., Carrari F., Dellapenna D., Fraser P.D., Hellmann H., Osorio S., Rothan C., Valpuesta V., Caris-Veyrat C. & Fernie A.R.:
Vitamin deficiencies in humans: can plant science help?
Plant Cell 2012, 24(2):395-414. PMID: 22374394.

Oukarroum A., Strasser R.J. & Schansker G.:
Heat stress and the photosynthetic electron transport chain of the lichen Parmelina tiliacea (Hoffm.) Ach. in the dry and the wet state: differences and similarities with the heat stress response of higher plants.
Photosynth Res 2012, 111(3):303-314. PMID: 22373736.

Nishimura T., Molinard G., Petty T.J., Broger L., Gabus C., Halazonetis T.D., Thore S. & Paszkowski J.:
Structural Basis of Transcriptional Gene Silencing Mediated by Arabidopsis MOM1.
PLoS Genet 2012, 8(2):e1002484. PMID: 22346760.

Heijde M. & Ulm R.:
UV-B photoreceptor-mediated signalling in plants.
Trends Plant Sci 2012, 17(4):230-237. PMID: 22326562.

Lang-Mladek C., Xie L., Nigam N., Chumak N., Binkert M., Neubert S. & Hauser M.T.:
UV-B signaling pathways and fluence rate dependent transcriptional regulation of ARIADNE12.
Physiol Plant 2012, 145(4):527-39. PMID: 22188380.

 

2011

Thevenon F., Regier N., Benagli C., Tonolla M., Adatte T., Wildi W. & Pote J.:
Characterization of fecal indicator bacteria in sediments cores from the largest freshwater lake of Western Europe (Lake Geneva, Switzerland).
Ecotoxicol Environ Saf 2011. PMID: 22209635.

Andres-Barrao C., Saad M.M., Chappuis M.L., Boffa M., Perret X., Perez R.O. & Barja F.:
Proteome analysis of Acetobacter pasteurianus during acetic acid fermentation.
J Proteomics 2011. PMID: 22155126.

Ceppi M.G., Oukarroum A., Cicek N., Strasser R.J. & Schansker G.:
The IP amplitude of the fluorescence rise OJIP is sensitive to changes in the photosystem I content of leaves: a study on plants exposed to magnesium and sulfate deficiencies, drought stress and salt stress.
Physiol Plant 2011. PMID: 22121914.

Willig A., Shapiguzov A., Goldschmidt-Clermont M. & Rochaix J.D.:
The Phosphorylation Status of the Chloroplast Protein Kinase STN7 of Arabidopsis Affects Its Turnover.
Plant Physiol 2011, 157(4):2102-2107. PMID: 21976483.

Stephan R., Cernela N., Ziegler D., Pfluger V., Tonolla M., Ravasi D., Fredriksson-Ahomaa M. & Hachler H.:
Rapid species specific identification and subtyping of Yersinia enterocolitica by MALDI-TOF Mass spectrometry.
J Microbiol Methods 2011. PMID: 21914454.

Piskurewicz U. & Lopez-Molina L.:
Isolation of genetic material from Arabidopsis seeds.
Methods Mol Biol 2011, 773:151-164. PMID: 21898255.

Gonzalez Besteiro M.A., Bartels S., Albert A. & Ulm R.:
Arabidopsis MAP kinase phosphatase 1 and its target MAP kinases 3 and 6 antagonistically determine UV-B stress tolerance, independent of the UVR8 photoreceptor pathway.
Plant J 2011. PMID: 21790814.

Reiland S., Finazzi G., Endler A., Willig A., Baerenfaller K., Grossmann J., Gerrits B., Rutishauser D., Gruissem W., Rochaix J.D. & Baginsky S.:
Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF).
Proc Natl Acad Sci U S A 2011, 108(31):12955-12960. PMID: 21768351.

Fumeaux C., Bakkou N., Kopcinska J., Golinowski W., Westenberg D.J., Muller P. & Perret X.:
Functional analysis of the nifQdctA1y4vGHIJ operon of Sinorhizobium fredii strain NGR234 using a transposon with a NifA-dependent read-out promoter.
Microbiology 2011. PMID: 21719545.

Ohno Y., Narangajavana J., Yamamoto A., Hattori T., Kagaya Y., Paszkowski J., Gruissem W., Hennig L. & Takeda S.:
Ectopic Gene Expression and Organogenesis in Arabidopsis Mutants Missing BRU1 Required for Genome Maintenance.
Genetics 2011. PMID: 21705754.

Rochaix J.D.:
Reprint of: Regulation of photosynthetic electron transport.
Biochim Biophys Acta 2011, 1807(8):878-886. PMID: 21605544.

Cotado-Sampayo M., Ortega Perez R., Ojha M., Seum C. & Barja F.:
Characterization of Neurospora crassa alpha-actinin.
Curr Microbiol 2011, 63(1):100-105. PMID: 21598047.

Fankhauser C. & Ulm R.:
Light-regulated interactions with SPA proteins underlie cryptochrome-mediated gene expression.
Genes Dev 2011, 25(10):1004-1009. PMID: 21576261.

Rizzini L., Favory J.J., Cloix C., Faggionato D., O'Hara A., Kaiserli E., Baumeister R., Schafer E., Nagy F., Jenkins G.I. & Ulm R.:
Perception of UV-B by the Arabidopsis UVR8 protein.
Science 2011, 332(6025):103-106. PMID: 21454788.

Mirouze M. & Paszkowski J.:
Epigenetic contribution to stress adaptation in plants.
Curr Opin Plant Biol 2011, 14(3):267-274. PMID: 21450514.

Anderson J.C., Bartels S., Besteiro M.A., Shahollari B., Ulm R. & Peck S.C.:
Arabidopsis MAP Kinase Phosphatase 1 (AtMKP1) negatively regulates MPK6-mediated PAMP responses and resistance against bacteria.
Plant J 2011, 67(2):258-268. PMID: 21447069.

Andres-Barrao C., Falquet L., Calderon-Copete S.P., Descombes P., Ortega Perez R. & Barja F.:
Genome sequences of the high-acetic acid-resistant bacteria Gluconacetobacter europaeus LMG 18890T and G. europaeus LMG 18494 (reference strains), G. europaeus 5P3, and Gluconacetobacter oboediens 174Bp2 (isolated from vinegar).
J Bacteriol 2011, 193(10):2670-2671. PMID: 21441523.

Day A. & Goldschmidt-Clermont M.:
The chloroplast transformation toolbox: selectable markers and marker removal.
Plant Biotechnol J 2011, 9(5):540-553. PMID: 21426476.

Parent C., Crevecoeur M., Capelli N. & Dat J.F.:
Contrasting growth and adaptive responses of two oak species to flooding stress: role of non-symbiotic haemoglobin.
Plant Cell Environ 2011, 34(7):1113-1126. PMID: 21410709.

Ito H., Gaubert H., Bucher E., Mirouze M., Vaillant I. & Paszkowski J.:
An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.
Nature 2011, 472(7341):115-119. PMID: 21399627.

Feher B., Kozma-Bognar L., Kevei E., Hajdu A., Binkert M., Davis S.J., Schafer E., Ulm R. & Nagy F.:
Functional interaction of the circadian clock and UV RESISTANCE LOCUS 8-controlled UV-B signaling pathways in Arabidopsis thaliana.
Plant J 2011, 67(1):37-48. PMID: 21395889.

Paszkowski J. & Grossniklaus U.:
Selected aspects of transgenerational epigenetic inheritance and resetting in plants.
Curr Opin Plant Biol 2011, 14(2):195-203. PMID: 21333585.

Moccand C., Kaufmann M. & Fitzpatrick T.B.:
It takes two to tango: defining an essential second active site in pyridoxal 5'-phosphate synthase.
PLoS One 2011, 6(1):e16042. PMID: 21283685.

Raschke M., Boycheva S., Crevecoeur M., Nunes-Nesi A., Witt S., Fernie A.R., Amrhein N. & Fitzpatrick T.B.:
Enhanced levels of vitamin B(6) increase aerial organ size and positively affect stress tolerance in Arabidopsis.
Plant J 2011, 66(3):414-432. PMID: 21241390.

Rochaix J.D.:
Assembly of the photosynthetic apparatus.
Plant Physiol 2011, 155(4):1493-1500. PMID: 21239619.

Rochaix J.D.:
Regulation of photosynthetic electron transport.
Biochim Biophys Acta 2011, 1807(3):375-383. PMID: 21118674.

Michelet L., Lefebvre-Legendre L., Burr S.E., Rochaix J.D. & Goldschmidt-Clermont M.:
Enhanced chloroplast transgene expression in a nuclear mutant of Chlamydomonas.
Plant Biotechnol J 2011, 9(5):565-574. PMID: 20809927.

Peduzzi S., Welsh A., Demarta A., Decristophoris P., Peduzzi R., Hahn D. & Tonolla M.:
Thiocystis chemoclinalis sp. nov. and Thiocystis cadagnonensis sp. nov., motile purple sulfur bacteria isolated from the chemocline of a meromictic lake.
Int J Syst Evol Microbiol 2011, 61(Pt 7):1682-7. PMID: 20729307.